RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 RABGEF1Q9UJ41 708 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 MYRFQ9Y2G1 1151 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TMA7Q9Y2S6 64 aaKnown RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 CYP3A7-CYP3A51PA0A087WV96 503 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 APOC4-APOC2K7ER74 178 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 MAN1A2O60476 641 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 APOC2P02655 101 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 GM2AP17900 193 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 CYP3A7P24462 503 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 C21orf59P57076 290 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 NAA20P61599 178 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 FAM83EQ2M2I3 478 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 FBXW8Q8N3Y1 598 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TFB1MQ8WVM0 346 aaKnown RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 GLIS2Q9BZE0 524 aaPredicted RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 EPB41L4BQ9H329 900 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 WRAP73Q9P2S5 460 aaPredicted RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 CSADQ9Y600 493 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 CNTNAP2Q9UHC6 1331 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TRIM13O60858 407 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CXCL8P10145 99 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 BFSP2Q13515 415 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ZC3H12AQ5D1E8 599 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 TBCELQ5QJ74 424 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ADCK1Q86TW2 530 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 SAPCD2Q86UD0 394 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 PQLC1Q8N2U9 271 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 SYTL5Q8TDW5 730 aaPredicted RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 PDCD6IPQ8WUM4 868 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 ZDHHC15Q96MV8 337 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 MIPEPQ99797 713 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CNPY3Q9BT09 278 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 TRPC7Q9HCX4 862 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 MRPL40Q9NQ50 206 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 GOLGA8CPA6NN73 597 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ZNF839A8K0R7 811 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 SMAPO00193 183 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CLOCKO15516 846 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CA8P35219 290 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CAPRIN1Q14444 709 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 GALNTL6Q49A17 601 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 SEC14L1Q92503 715 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 MBOAT7Q96N66 472 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 NT5C1AQ9BXI3 368 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 SLC17A6Q9P2U8 582 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 GNEQ9Y223 722 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 ADGRA2Q96PE1 1338 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 PTGES3LE9PB15 166 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 NR5A2O00482 541 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 INPP4BO15327 924 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 TMEM63AO94886 807 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ALBP02768 609 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 NR4A1P22736 598 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CYP2F1P24903 491 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 TPI1P60174 286 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 BNIPLQ7Z465 357 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 MAP4K3Q8IVH8 894 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 UTP4Q969X6 686 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 DCUN1D1Q96GG9 259 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 TIPINQ9BVW5 301 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ZC3H11AO75152 810 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP42-206ENST00000479544 SERPINA6P08185 405 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ZFXP17010 805 aaPredicted RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 FDFT1P37268 417 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CLCN3P51790 818 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 PTPN11Q06124 597 aaPredicted RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 MPP3Q13368 585 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CARTPTQ16568 116 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ZIK1Q3SY52 487 aaPredicted RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 RNASEH2BQ5TBB1 312 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 GPR107Q5VW38 600 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 TRMT10BQ6PF06 316 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 FOXR2Q6PJQ5 311 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 RTKN2Q8IZC4 609 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 KLHL23Q8NBE8 558 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 GMCL1Q96IK5 515 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CIB1Q99828 191 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 HERPUD2Q9BSE4 406 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 VPS33BQ9H267 617 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 CAB39LQ9H9S4 337 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 ZNF70Q9UC06 446 aaPredicted RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 CLEC11AQ9Y240 323 aa13.87□□□□□ -0.19
USP42-206ENST00000479544 HBS1LQ9Y450 684 aaKnown RBP13.87□□□□□ -0.19
USP42-206ENST00000479544 AP3B1O00203 1094 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 RARBP10826 455 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 PSMD7P51665 324 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 STX5Q13190 355 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 DGKZQ13574 1117 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 CSHL1Q14406 222 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 KCTD2Q14681 263 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 MAPRE2Q15555 327 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 MSS51Q4VC12 460 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 ATF7IP2Q5U623 682 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 C9orf131Q5VYM1 1079 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 SLC9A9Q8IVB4 645 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 C4orf19Q8IY42 314 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 PDCD2LQ9BRP1 358 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 MYH7P12883 1935 aa13.86□□□□□ -0.19
USP42-206ENST00000479544 TOMM70O94826 608 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms