RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZNF70Q9UC06 446 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 TBC1D29Q9UFV1 150 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC13A4Q9UKG4 626 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 PADI4Q9UM07 663 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 TRIM17Q9Y577 477 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 A0A0B4J269 797 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 A0A1W2PPH5 198 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 PGPEP1LA6NFU8 196 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 POLRMTO00411 1230 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ZBTB43O43298 467 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 DOK2O60496 412 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 KIF20AO95235 890 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 STARD3NLO95772 234 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 TTLL1O95922 423 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ADRB2P07550 413 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 EBLN1P0CF75 366 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ATP5F1P24539 256 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 AKAP5P24588 427 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 CNTFP26441 200 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 MAGEA8P43361 318 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 PRIM2P49643 509 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 TUBP50607 506 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 NXPH1P58417 271 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 TLE1Q04724 770 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 TUBB3Q13509 450 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 BECN1Q14457 450 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 LLGL1Q15334 1064 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 KIAA0753Q2KHM9 967 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 OVCH2Q7RTZ1 564 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 NUP54Q7Z3B4 507 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 CCDC91Q7Z6B0 441 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 GALNT7Q86SF2 657 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 DZIP1Q86YF9 867 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 MYOCDQ8IZQ8 938 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 KRT78Q8N1N4 520 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 AVL9Q8NBF6 648 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 FBXO30Q8TB52 745 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 DENND1AQ8TEH3 1009 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 MRGPRX4Q96LA9 322 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ACO2Q99798 780 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 VRK1Q99986 396 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC39A3Q9BRY0 314 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 APOL5Q9BWW9 433 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 C1QTNF7Q9BXJ2 289 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 TEX13BQ9BXU2 312 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ARHGAP39Q9C0H5 1083 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 GHITMQ9H3K2 345 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNF304Q9HCX3 659 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 KLC4Q9NSK0 619 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 EXOC1Q9NV70 894 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 TMOD4Q9NZQ9 345 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNF624Q9P2J8 865 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 CLIP2Q9UDT6 1046 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 UNC13AQ9UPW8 1703 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 AOX1Q06278 1338 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 ADGRA2Q96PE1 1338 aa5.23□□□□□ -1.57
CCDC88A-210ENST00000468534 WDR27A2RRH5 827 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNF785A8K8V0 405 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 A8MVJ9 347 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 KRTAP29-1A8MX34 341 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 H0YC42 278 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 GCOM1H8Y6P7 765 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CAPN9O14815 690 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 MCF2LO15068 1137 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ZBTB14O43829 449 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGA12O60330 932 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 SOCS5O75159 536 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 TBCAO75347 108 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 OFD1O75665 1012 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC22A3O75751 556 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CKMT1AP12532 417 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ALOX12P18054 663 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ITGB6P18564 788 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CHRM3P20309 590 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CD9P21926 228 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 TNFSF4P23510 183 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 EDNRBP24530 442 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 TMOD1P28289 359 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PBLDP30039 288 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ALDH3A2P51648 485 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 NR1H2P55055 460 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 RRP1P56182 461 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 SOX10P56693 466 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 NLRP5P59047 1200 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CYP4A11Q02928 519 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 NSUN2Q08J23 767 aaKnown RBP eCLIP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 RABEP1Q15276 862 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CAVIN4Q5BKX8 364 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 DNTTIP2Q5QJE6 756 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ATAT1Q5SQI0 421 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 IZUMO3Q5VZ72 239 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 GPR139Q6DWJ6 353 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 RAB12Q6IQ22 244 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 BHLHA9Q7RTU4 235 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 C1QL2Q7Z5L3 287 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CACNA2D3Q8IZS8 1091 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 VGLL2Q8N8G2 317 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 OR52K2Q8NGK3 314 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms