RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 UCMAQ8WVF2 138 aa23.92■■□□□ 1.42
PTPN4-208ENST00000460289 PIWIL1Q96J94 861 aaKnown RBP23.92■■□□□ 1.42
PTPN4-208ENST00000460289 TPSD1Q9BZJ3 242 aa23.92■■□□□ 1.42
PTPN4-208ENST00000460289 SYNCQ9H7C4 482 aa23.92■■□□□ 1.42
PTPN4-208ENST00000460289 ASNSD1Q9NWL6 643 aa23.92■■□□□ 1.42
PTPN4-208ENST00000460289 TMEM63CQ9P1W3 806 aa23.92■■□□□ 1.42
PTPN4-208ENST00000460289 BCCIPQ9P287 314 aaKnown RBP eCLIP23.92■■□□□ 1.42
PTPN4-208ENST00000460289 LIMA1Q9UHB6 759 aaKnown RBP23.92■■□□□ 1.42
PTPN4-208ENST00000460289 DAAM1Q9Y4D1 1078 aa23.92■■□□□ 1.42
PTPN4-208ENST00000460289 LRRC10BA6NIK2 292 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 GFRA2O00451 464 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 TIMM44O43615 452 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 RHOBTB1O94844 696 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 HOXB2P14652 356 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 COPB1P53618 953 aaKnown RBP23.91■■□□□ 1.42
PTPN4-208ENST00000460289 TYRO3Q06418 890 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 MPP7Q5T2T1 576 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 TMEM35BQ8NCS4 154 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 SLC39A13Q96H72 371 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 FCRL2Q96LA5 508 aaPredicted RBP23.91■■□□□ 1.42
PTPN4-208ENST00000460289 USP18Q9UMW8 372 aa23.91■■□□□ 1.42
PTPN4-208ENST00000460289 TCRBV21S2A2A0A5A6 115 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 HSF2BPO75031 334 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 HOXD9P28356 352 aaPredicted RBP23.9■■□□□ 1.42
PTPN4-208ENST00000460289 SPEM2Q0P670 501 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 BYSLQ13895 437 aaKnown RBP23.9■■□□□ 1.42
PTPN4-208ENST00000460289 EIF4HQ15056 248 aaKnown RBP23.9■■□□□ 1.42
PTPN4-208ENST00000460289 ELF2Q15723 593 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 GEN1Q17RS7 908 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 PLK5Q496M5 336 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 DCAF6Q58WW2 860 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 PIK3R6Q5UE93 754 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 OR6B2Q6IFH4 312 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 TAC4Q86UU9 113 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 ZDHHC17Q8IUH5 632 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 PGBD3Q8N328 593 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 ADAM32Q8TC27 787 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 HMGB4Q8WW32 186 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 ACOX2Q99424 681 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 GABRG3Q99928 467 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 TJP2Q9UDY2 1190 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 CLEC4EQ9ULY5 219 aa23.9■■□□□ 1.42
PTPN4-208ENST00000460289 MYO18AQ92614 2054 aaKnown RBP23.89■■□□□ 1.41
PTPN4-208ENST00000460289 F8VZ95 297 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 TRUB2O95900 331 aaKnown RBP23.89■■□□□ 1.41
PTPN4-208ENST00000460289 APOEP02649 317 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 TGM1P22735 817 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 GBP1P32455 592 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 WASP42768 502 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 CDK17Q00537 523 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 TAF5Q15542 800 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 ZNF557Q8N988 423 aaPredicted RBP23.89■■□□□ 1.41
PTPN4-208ENST00000460289 OLIG1Q8TAK6 271 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 DUSP15Q9H1R2 295 aaPredicted RBP23.89■■□□□ 1.41
PTPN4-208ENST00000460289 GANQ9H2C0 597 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 FAM207AQ9NSI2 230 aaPredicted RBP23.89■■□□□ 1.41
PTPN4-208ENST00000460289 ELOVL2Q9NXB9 296 aa23.89■■□□□ 1.41
PTPN4-208ENST00000460289 GOLGA6L7A0A1B0GV03 622 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 TYW5A2RUC4 315 aaKnown RBP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 DCLK1O15075 740 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 FOXD2O60548 495 aaPredicted RBP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 ZNF18P17022 549 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 CDH5P33151 784 aaPredicted RBP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 POLR2FP61218 127 aaKnown RBP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 SLC6A3Q01959 620 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 NCAPHQ15003 741 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 FAM133BQ5BKY9 247 aaKnown RBP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 RFWD3Q6PCD5 774 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 FAM183BPQ6ZVS7 135 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 DEFB106AQ8N104 65 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 SLC2A13Q96QE2 648 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 SEMA4GQ9NTN9 838 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 THAP10Q9P2Z0 257 aaPredicted RBP23.88■■□□□ 1.41
PTPN4-208ENST00000460289 SLC12A6Q9UHW9 1150 aa23.88■■□□□ 1.41
PTPN4-208ENST00000460289 A0A1W2PQF6 199 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 PRR5-ARHGAP8B1AHC4 643 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 EPN2O95208 641 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 IGLV3-25P01717 112 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 ERBB2P04626 1255 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 SLC2A3P11169 496 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 SLC6A4P31645 630 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 ID4P47928 161 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 ARHGAP8P85298 464 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 LMNB2Q03252 620 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 ARID5AQ03989 594 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 CSRP2Q16527 193 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 PTPN20Q4JDL3 420 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 TAF3Q5VWG9 929 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 CAVIN1Q6NZI2 390 aaKnown RBP23.87■■□□□ 1.41
PTPN4-208ENST00000460289 OLFML1Q6UWY5 402 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 ZNF677Q86XU0 584 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 HJURPQ8NCD3 748 aaPredicted RBP23.87■■□□□ 1.41
PTPN4-208ENST00000460289 WFIKKN2Q8TEU8 576 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 DDX1Q92499 740 aaKnown RBP23.87■■□□□ 1.41
PTPN4-208ENST00000460289 SPACA7Q96KW9 195 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 PCMTD1Q96MG8 357 aaPredicted RBP23.87■■□□□ 1.41
PTPN4-208ENST00000460289 BPIFA3Q9BQP9 254 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 CIPCQ9C0C6 399 aa23.87■■□□□ 1.41
PTPN4-208ENST00000460289 PARD6AQ9NPB6 346 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms