RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 SUN1O94901 812 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 ZWINTO95229 277 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 F9P00740 461 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 TPSB2P20231 275 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 FDFT1P37268 417 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 CLCNKBP51801 687 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 AFF1P51825 1210 aaKnown RBP13.27□□□□□ -0.29
DDX56-204ENST00000431640 TKTL1P51854 596 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 ZNF135P52742 658 aaPredicted RBP13.27□□□□□ -0.29
DDX56-204ENST00000431640 CDK16Q00536 496 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 TPSAB1Q15661 275 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 LGSNQ5TDP6 509 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 NUGGCQ68CJ6 796 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 HEATR6Q6AI08 1181 aaKnown RBP13.27□□□□□ -0.29
DDX56-204ENST00000431640 CAPN12Q6ZSI9 719 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 MICALL1Q8N3F8 863 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 CCDC185Q8N715 623 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 DENND1AQ8TEH3 1009 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 TFB1MQ8WVM0 346 aaKnown RBP13.27□□□□□ -0.29
DDX56-204ENST00000431640 APBB2Q92870 758 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 LPPQ93052 612 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 UROC1Q96N76 676 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 QKIQ96PU8 341 aaKnown RBP eCLIP13.27□□□□□ -0.29
DDX56-204ENST00000431640 ADAM2Q99965 735 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 USP15Q9Y4E8 981 aaPredicted RBP13.27□□□□□ -0.29
DDX56-204ENST00000431640 RAD54BQ9Y620 910 aa13.27□□□□□ -0.29
DDX56-204ENST00000431640 SF3B1O75533 1304 aaKnown RBP eCLIP13.27□□□□□ -0.295e-6■■■■■ 61.3
DDX56-204ENST00000431640 M0QYT0 321 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 CLDN5O00501 218 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 ASMTLO95671 621 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 ODC1P11926 461 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 AMPD1P23109 780 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 ACAT1P24752 427 aaKnown RBP13.26□□□□□ -0.29
DDX56-204ENST00000431640 MAP3K7CLP57077 242 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 GAD2Q05329 585 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 DEUP1Q05D60 604 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 ACTN3Q08043 901 aaPredicted RBP13.26□□□□□ -0.29
DDX56-204ENST00000431640 UPP1Q16831 310 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 RAB41Q5JT25 222 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 KCNT2Q6UVM3 1135 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 AGMOQ6ZNB7 445 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 RGS9BPQ6ZS82 235 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 DEFB128Q7Z7B8 93 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 TAB3Q8N5C8 712 aaPredicted RBP13.26□□□□□ -0.29
DDX56-204ENST00000431640 CCT6BQ92526 530 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 NTAN1Q96AB6 310 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 TGS1Q96RS0 853 aaKnown RBP13.26□□□□□ -0.29
DDX56-204ENST00000431640 PAFAH2Q99487 392 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 ETNK1Q9HBU6 452 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 XAB2Q9HCS7 855 aaKnown RBP13.26□□□□□ -0.29
DDX56-204ENST00000431640 CRTAC1Q9NQ79 661 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 KRT82Q9NSB4 513 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 MIOSQ9NXC5 875 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 CHMP2BQ9UQN3 213 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 USP3Q9Y6I4 520 aa13.26□□□□□ -0.29
DDX56-204ENST00000431640 A0A0U1RQF3 1178 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 TM9SF1O15321 606 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 BANF1O75531 89 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 AP1G2O75843 785 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 BEST1O76090 585 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 TIMP1P01033 207 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 CSF2RAP15509 400 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 GOT1P17174 413 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 CA4P22748 312 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 HCAR3P49019 387 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 LIG3P49916 1009 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 ATXN1P54253 815 aaKnown RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 DAOAP59103 153 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 YWHAGP61981 247 aaKnown RBP eCLIP13.25□□□□□ -0.29
DDX56-204ENST00000431640 GBE1Q04446 702 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 SLC10A2Q12908 348 aaPredicted RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 PDK1Q15118 436 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 SEPT7Q16181 437 aaKnown RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 ARL13BQ3SXY8 428 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 NCBP2-AS2Q69YL0 99 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 ZNF598Q86UK7 904 aaKnown RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 FAM35AQ86V20 835 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 FAM131BQ86XD5 332 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 C7orf61Q8IZ16 206 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 GDAP1Q8TB36 358 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 DCAKDQ8WVC6 231 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 HTR3CQ8WXA8 447 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 IRGQQ8WZA9 623 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 PGAP3Q96FM1 320 aaPredicted RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 SMARCD1Q96GM5 515 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 ACBD6Q9BR61 282 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 TRIM62Q9BVG3 475 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 DTLQ9NZJ0 730 aa13.25□□□□□ -0.29
DDX56-204ENST00000431640 LAMA2P24043 3122 aaKnown RBP13.25□□□□□ -0.29
DDX56-204ENST00000431640 FOXO6A8MYZ6 492 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 H0YHG0 523 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 NCAM2O15394 837 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 TYROBPO43914 113 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 SPAG7O75391 227 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 MT-ND3P03897 115 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 CYP11A1P05108 521 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 APRTP07741 180 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 GSTA1P08263 222 aa13.24□□□□□ -0.29
DDX56-204ENST00000431640 INHBAP08476 426 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms