RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 RIOX1Q9H6W3 641 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 MOCS1Q9NZB8 636 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 TBC1D30Q9Y2I9 924 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 Q9Y3F1 56 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 TBKBP1A7MCY6 615 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 E9PLN8 166 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 GPR42O15529 346 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 PGK1P00558 417 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 HK1P19367 917 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 HSPA4P34932 840 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 CPT1AP50416 773 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 AK2P54819 239 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 BMT2Q1RMZ1 405 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 TUBB8Q3ZCM7 444 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 CRB2Q5IJ48 1285 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 KCNV1Q6PIU1 500 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 CPLX2Q6PUV4 134 aaKnown RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 MICU3Q86XE3 530 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 LGI4Q8N135 537 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 FANCBQ8NB91 859 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 IL17RDQ8NFM7 739 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 PIGSQ96S52 555 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 VKORC1Q9BQB6 163 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 GLT8D2Q9H1C3 349 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 CPVLQ9H3G5 476 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 WDCPQ9H6R7 721 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 STARD7Q9NQZ5 370 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 PLA2G3Q9NZ20 509 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 COL20A1Q9P218 1284 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 ATP11BQ9Y2G3 1177 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 CYP46A1Q9Y6A2 500 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 SYNRGQ9UMZ2 1314 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 RHPN2P1A8MT19 583 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 H0YGN5 161 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 hCG_1984214I3L0E3 225 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 LAMTOR5O43504 91 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 BRAFP15056 766 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 TSHRP16473 764 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 CST5P28325 142 aaPredicted RBP7.08□□□□□ -1.28
USP40-202ENST00000409945 MSX2P35548 267 aaPredicted RBP7.08□□□□□ -1.28
USP40-202ENST00000409945 TRAPPC10P48553 1259 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 CREMQ03060 361 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 CNGA2Q16280 664 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 PABPC1LQ4VXU2 614 aaKnown RBP7.08□□□□□ -1.28
USP40-202ENST00000409945 FKBP15Q5T1M5 1219 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 BORAQ6PGQ7 559 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 SLC30A10Q6XR72 485 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 PDZD4Q76G19 769 aaPredicted RBP7.08□□□□□ -1.28
USP40-202ENST00000409945 GPRIN1Q7Z2K8 1008 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 TLK2Q86UE8 772 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 ZNF713Q8N859 430 aaPredicted RBP7.08□□□□□ -1.28
USP40-202ENST00000409945 CCDC12Q8WUD4 166 aaPredicted RBP7.08□□□□□ -1.28
USP40-202ENST00000409945 RIPOR3Q96MK2 946 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 TLR10Q9BXR5 811 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 TRIM54Q9BYV2 358 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 WDR11Q9BZH6 1224 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 COMMD10Q9Y6G5 202 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 BRCA2P51587 3418 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 FRMPD3Q5JV73 1810 aa7.08□□□□□ -1.28
USP40-202ENST00000409945 ELP1O95163 1332 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 KLF18A0A0U1RQI7 1052 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 FRS3O43559 492 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 EIF3JO75822 258 aaKnown RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 STAM2O75886 525 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 DNAJB5O75953 348 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 ITGB1P05556 798 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 CASTP20810 708 aaKnown RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 TNFSF4P23510 183 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 CCND2P30279 289 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 METAP2P50579 478 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP40-202ENST00000409945 ACLYP53396 1101 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 DUSP28Q4G0W2 176 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 SLC39A5Q6ZMH5 540 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 FBXO16Q8IX29 292 aaPredicted RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 RNF152Q8N8N0 203 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 OR10H5Q8NGA6 315 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 MORC4Q8TE76 937 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 PIBF1Q8WXW3 757 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 PGBD4Q96DM1 585 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 SSBP3Q9BWW4 388 aaPredicted RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 LRRC2Q9BYS8 371 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 SMURF2Q9HAU4 748 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 SNX13Q9Y5W8 968 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 RASA4BC9J798 803 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 LEFTY2O00292 366 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 RASA4O43374 803 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 MGEA5O60502 916 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 SLC43A1O75387 559 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 ZSCAN22P10073 491 aaPredicted RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 TXNP10599 105 aaKnown RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 HSD17B4P51659 736 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 CLRN1P58418 232 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 UBXN2BQ14CS0 331 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 UTP14CQ5TAP6 766 aaKnown RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 TOGARAM2Q6ZUX3 1019 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 OR2C3Q8N628 320 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 OR6J1Q8NGC5 347 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 BRIX1Q8TDN6 353 aaKnown RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 ARL8AQ96BM9 186 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 FAM167AQ96KS9 214 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms