RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SCML2Q9UQR0 700 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 TP53BP1Q12888 1972 aaPredicted RBP9.64□□□□□ -0.87
VPS53-203ENST00000401468 GON4LQ3T8J9 2241 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 TCRBV5S1A1TA0A578 114 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 OTOL1A6NHN0 477 aaPredicted RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 LAMTOR5O43504 91 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 TADA3O75528 432 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 FBXO21O94952 628 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 FGF19O95750 216 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 F11P03951 625 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 ARSAP15289 507 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 PPP3CCP48454 512 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 PXNP49023 591 aaPredicted RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 KPNA1P52294 538 aaPredicted RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 PFKPQ01813 784 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 SATB1Q01826 763 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 PRKCQQ04759 706 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 GAS6Q14393 721 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 VEPH1Q14D04 833 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 TAF3Q5VWG9 929 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 ACAD10Q6JQN1 1059 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 ZNF852Q6ZMS4 543 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 ARCQ7LC44 396 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 ZDHHC17Q8IUH5 632 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 TMTC1Q8IUR5 882 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 PASD1Q8IV76 773 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 MFSD6LQ8IWD5 586 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 LRRC8AQ8IWT6 810 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 CCDC170Q8IYT3 715 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 SPC24Q8NBT2 197 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 C1orf131Q8NDD1 294 aaKnown RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 IRGQQ8WZA9 623 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 SHDQ96IW2 340 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 C1QTNF2Q9BXJ5 285 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 FBXO44Q9H4M3 255 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 EBF3Q9H4W6 596 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 NHEJ1Q9H9Q4 299 aaPredicted RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 ZNHIT6Q9NWK9 470 aaKnown RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 ASNSD1Q9NWL6 643 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 NAGPAQ9UK23 515 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 CEP83Q9Y592 693 aa9.63□□□□□ -0.87
VPS53-203ENST00000401468 TNRC6BQ9UPQ9 1833 aaKnown RBP9.63□□□□□ -0.87
VPS53-203ENST00000401468 C2orf78A6NCI8 922 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 GOLGA6L6A8MZA4 724 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 E5RJQ4 531 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 ARNTLO00327 626 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 PAPSS1O43252 624 aaPredicted RBP9.62□□□□□ -0.87
VPS53-203ENST00000401468 RTN2O75298 545 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 ZBED1O96006 694 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 ERBB2P04626 1255 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 PFKLP17858 780 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 TNFAIP3P21580 790 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 YWHAQP27348 245 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 WEE1P30291 646 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 EIF4A3P38919 411 aaKnown RBP9.62□□□□□ -0.87
VPS53-203ENST00000401468 TUBP50607 506 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 TKTL1P51854 596 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 SNX16P57768 344 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 DAOAP59103 153 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 ADIGQ0VDE8 80 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 C6orf118Q5T5N4 469 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 NAA35Q5VZE5 725 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 OLFML1Q6UWY5 402 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 VASH1Q7L8A9 365 aaPredicted RBP9.62□□□□□ -0.87
VPS53-203ENST00000401468 VPS36Q86VN1 386 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 CCDC112Q8NEF3 446 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 SCAMP5Q8TAC9 235 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 CSGALNACT1Q8TDX6 532 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 IRF7Q92985 503 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 PPP1R13BQ96KQ4 1090 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 NOX5Q96PH1 765 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 BAG1Q99933 345 aaPredicted RBP9.62□□□□□ -0.87
VPS53-203ENST00000401468 TAS2R14Q9NYV8 317 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 UXTQ9UBK9 157 aaPredicted RBP9.62□□□□□ -0.87
VPS53-203ENST00000401468 TJP2Q9UDY2 1190 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 ADAMTS1Q9UHI8 967 aa9.62□□□□□ -0.87
VPS53-203ENST00000401468 DOCK4Q8N1I0 1966 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 CHURC1-FNTBB4DL54 471 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 EIF3CLB5ME19 914 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 SPECC1L-ADORA2AF8WAN1 911 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 SART1O43290 800 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 OLFM2O95897 454 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ABL1P00519 1130 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 LMNAP02545 664 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 GLI1P08151 1106 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 NSFP46459 744 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 FNTBP49356 437 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 CCZ1BP86790 482 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 CCZ1P86791 482 aaPredicted RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 ZNF268Q14587 947 aaPredicted RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 TCEAL1Q15170 157 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ARHGAP15Q53QZ3 475 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 TDRD12Q587J7 1177 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 C10orf76Q5T2E6 689 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ALKBH5Q6P6C2 394 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 SLC26A9Q7LBE3 791 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 SCD5Q86SK9 330 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 MON1AQ86VX9 555 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ERICH1Q86X53 443 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 XYLT1Q86Y38 959 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms