RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 RNF40O75150 1001 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 KAT7O95251 611 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 APODP05090 189 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 SLC2A3P11169 496 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 GRIA2P42262 883 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 RNASE9P60153 205 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 C1QBPQ07021 282 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 TRIM14Q14142 442 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 ZC3H12AQ5D1E8 599 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 ACAD10Q6JQN1 1059 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 ZNF571Q7Z3V5 609 aaPredicted RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 CPLX3Q8WVH0 158 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 NT5C3BQ969T7 300 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 P2RY11Q96G91 374 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 IRF2BPLQ9H1B7 796 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 METTL5Q9NRN9 209 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 DNAJC17Q9NVM6 304 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 TMEM51Q9NW97 253 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 BZW2Q9Y6E2 419 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 CASP14P31944 242 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 FLT3P36888 993 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 KDSRQ06136 332 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 MESP2Q0VG99 397 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 PPP2R5DQ14738 602 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 MPPE1Q53F39 396 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 FAM133BQ5BKY9 247 aaKnown RBP22.56■■□□□ 1.2
CLN3-207ENST00000395653 OTUD1Q5VV17 481 aaPredicted RBP22.56■■□□□ 1.2
CLN3-207ENST00000395653 HGSNATQ68CP4 663 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 VSTM4Q8IW00 320 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 BHMTQ93088 406 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 PGAP3Q96FM1 320 aaPredicted RBP22.56■■□□□ 1.2
CLN3-207ENST00000395653 DDX50Q9BQ39 737 aaKnown RBP22.56■■□□□ 1.2
CLN3-207ENST00000395653 PLK2Q9NYY3 685 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 FBXO10Q9UK96 956 aa22.56■■□□□ 1.2
CLN3-207ENST00000395653 CHURC1-FNTBB4DL54 471 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 K7EQS6 105 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 M0QYT0 321 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 SKILP12757 684 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 CCR1P32246 355 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 SULT1E1P49888 294 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 CCR3P51677 355 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 MTA1Q13330 715 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 SLC25A52Q3SY17 297 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 NADSYN1Q6IA69 706 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 GRAMD4Q6IC98 578 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 NUDT18Q6ZVK8 323 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 TERB1Q8NA31 727 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 C3orf20Q8ND61 904 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 DDI1Q8WTU0 396 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 BTN2A3PQ96KV6 586 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 PRMT8Q9NR22 394 aaPredicted RBP22.55■■□□□ 1.2
CLN3-207ENST00000395653 SLC12A6Q9UHW9 1150 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 FBXO4Q9UKT5 387 aa22.55■■□□□ 1.2
CLN3-207ENST00000395653 SYNJ2BP-COX16A0A087WUM0 186 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 KCNU1A8MYU2 1149 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 ATG13O75143 517 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 MOCS2O96007 188 aaPredicted RBP22.54■■□□□ 1.2
CLN3-207ENST00000395653 GZMAP12544 262 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 NME3Q13232 169 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 TDRD12Q587J7 1177 aaKnown RBP22.54■■□□□ 1.2
CLN3-207ENST00000395653 MAML2Q8IZL2 1156 aaPredicted RBP22.54■■□□□ 1.2
CLN3-207ENST00000395653 ATP6V0D2Q8N8Y2 350 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 TMA16Q96EY4 203 aaKnown RBP22.54■■□□□ 1.2
CLN3-207ENST00000395653 VCPIP1Q96JH7 1222 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 SLC2A11Q9BYW1 496 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 RBSNQ9H1K0 784 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 COX16Q9P0S2 106 aa22.54■■□□□ 1.2
CLN3-207ENST00000395653 H0Y858 1186 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 TSPAN3O60637 253 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 F9P00740 461 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 SERPING1P05155 500 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 ABCB4P21439 1286 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 SLC6A4P31645 630 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 TNFRSF4P43489 277 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 CXCL12P48061 93 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 DGKGP49619 791 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 MPP7Q5T2T1 576 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 PIK3R6Q5UE93 754 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 TRNP1Q6NT89 227 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 MCOLN2Q8IZK6 566 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 RNF34Q969K3 372 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 ADAM33Q9BZ11 813 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 PIGVQ9NUD9 493 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 TAS2R14Q9NYV8 317 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 CALCOCO1Q9P1Z2 691 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 SLC27A6Q9Y2P4 619 aa22.53■■□□□ 1.2
CLN3-207ENST00000395653 CACNA1HO95180 2353 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 GOLGA6L7A0A1B0GV03 622 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 TBC1D3BA6NDS4 549 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 DDX3XO00571 662 aaKnown RBP eCLIP22.52■■□□□ 1.23e-8■■■□□ 15.1
CLN3-207ENST00000395653 TRIM24O15164 1050 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 PAPSS2O95340 614 aaPredicted RBP22.52■■□□□ 1.2
CLN3-207ENST00000395653 CISD3P0C7P0 127 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 KRT3P12035 628 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 TFE3P19532 575 aaPredicted RBP22.52■■□□□ 1.2
CLN3-207ENST00000395653 HOXD9P28356 352 aaPredicted RBP22.52■■□□□ 1.2
CLN3-207ENST00000395653 CXCR3P49682 368 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 PKN3Q6P5Z2 889 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 RFWD3Q6PCD5 774 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 SND1Q7KZF4 910 aaKnown RBP eCLIP22.52■■□□□ 1.21e-7■■■□□ 15.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms