RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 C11orf70Q9BRQ4 267 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 KCNK12Q9HB15 430 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ZFP14Q9HCL3 533 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TMEM248Q9NWD8 314 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 MARCH2Q9P0N8 246 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TTC7AQ9ULT0 858 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 CCL26Q9Y258 94 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 FANCMQ8IYD8 2048 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 HNRNPLP14866 589 aaKnown RBP eCLIP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 HOXA6P31267 233 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 RPS9P46781 194 aaKnown RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 RPL7AP62424 266 aaKnown RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ZXDAP98168 799 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TDGQ13569 410 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 DMC1Q14565 340 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ADGRF1Q5T601 910 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PIK3R6Q5UE93 754 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 SLC35G2Q8TBE7 412 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 FAM161BQ96MY7 647 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PEBP4Q96S96 227 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 DDX50Q9BQ39 737 aaKnown RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 DLGAP2Q9P1A6 1054 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 CPQQ9Y646 472 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 NUMBLQ9Y6R0 609 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 MYL4P12829 197 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 HDCP19113 662 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TFE3P19532 575 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 IL4RP24394 825 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ADRA1BP35368 520 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TNFRSF4P43489 277 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 COPS2P61201 443 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PITX1P78337 314 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 GOLGA8FQ08AF8 430 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 GOLGA8DPQ0D2H9 430 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SLC14A2Q15849 920 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TSR1Q2NL82 804 aaKnown RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 FAM102AQ5T9C2 384 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 RALGPS2Q86X27 583 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 CREBRFQ8IUR6 639 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 KATNAL2Q8IYT4 538 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ARL14EPQ8N8R7 260 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SH3RF2Q8TEC5 729 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ATP2A3Q93084 1043 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SELENOOQ9BVL4 669 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 LUC7LQ9NQ29 371 aaKnown RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SZT2Q5T011 3432 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF189O75820 626 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 CCR1P32246 355 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 USP8P40818 1118 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TBX4P57082 545 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PFKPQ01813 784 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PPP2R5EQ16537 467 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TMEM196Q5HYL7 178 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 OR6B2Q6IFH4 312 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ATP6V0D2Q8N8Y2 350 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF564Q8TBZ8 553 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 NDRG1Q92597 394 aaKnown RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 GOLGA1Q92805 767 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF653Q96CK0 615 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 NUP85Q9BW27 656 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 CDH22Q9UJ99 828 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PCDHA3Q9Y5H8 950 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 HS3ST4Q9Y661 456 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PRRC2BQ5JSZ5 2229 aaKnown RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 H3BQ06 376 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 DCLK1O15075 740 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 DDX3YO15523 660 aaKnown RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 CYP17A1P05093 508 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TDGF1P13385 188 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PRLRP16471 622 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SLC6A4P31645 630 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 MAPKAPK2P49137 400 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 KCNQ1P51787 676 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 OXCT1P55809 520 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 PAFAH1B3Q15102 231 aaKnown RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 BOLA3Q53S33 107 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 TMCO4Q5TGY1 634 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SLC9A4Q6AI14 798 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 FIBINQ8TAL6 211 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 EDAQ92838 391 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF670Q9BS34 389 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 ACE2Q9BYF1 805 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 LACRTQ9GZZ8 138 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 SPTLC3Q9NUV7 552 aa7.28□□□□□ -1.24
LIMA1-202ENST00000394943 CHORDC1Q9UHD1 332 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-202ENST00000394943 LAMA2P24043 3122 aaKnown RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 HOXD9P28356 352 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 OPRD1P41143 372 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 PDK2Q15119 407 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 ALG1LQ6GMV1 187 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 RHBDF2Q6PJF5 856 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 ZNF572Q7Z3I7 529 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 SETD3Q86TU7 594 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 NT5DC3Q86UY8 548 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 UMODL1-AS1Q8N2C9 162 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 MAB21L3Q8N8X9 362 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 PIDD1Q9HB75 910 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 SPHK2Q9NRA0 654 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms