RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GGA2Q9UJY4 613 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 CFAP69A5D8W1 941 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 OR1D2P34982 312 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 ADRA1BP35368 520 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 CXCR3P49682 368 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 HTRA4P83105 476 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 OTUD4Q01804 1114 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 OTUD1Q5VV17 481 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 SLC9A4Q6AI14 798 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 PDZD4Q76G19 769 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 CCDC185Q8N715 623 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 SLC35B2Q8TB61 432 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 DQX1Q8TE96 717 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 FBXO32Q969P5 355 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 SNF8Q96H20 258 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 TLR8Q9NR97 1041 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 GPATCH2LQ9NWQ4 482 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 CLIC5Q9NZA1 410 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 FBXW11Q9UKB1 542 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 DNPEPQ9ULA0 475 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 RRP15Q9Y3B9 282 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 FAM92AA1XBS5 289 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 SLC2A3P11169 496 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 ATP1A2P50993 1020 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 EIF3EP60228 445 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 MTA1Q13330 715 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 RAB6CQ53S08 254 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 TADA2BQ86TJ2 420 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 ALLCQ8N6M5 410 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 RSAD2Q8WXG1 361 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 CENPTQ96BT3 561 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 FERMT1Q9BQL6 677 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 RAB6CQ9H0N0 254 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 MRPL17Q9NRX2 175 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 SLC12A6Q9UHW9 1150 aa18.85■□□□□ 0.61
CCDC88C-203ENST00000389856 STIP1P31948 543 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 HTR7P34969 479 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 ADCY8P40145 1251 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 HCAR3P49019 387 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 DUSP4Q13115 394 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 NOMO1Q15155 1222 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 OASLQ15646 514 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 RSPO2Q6UXX9 243 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 MICALCLQ6ZW33 695 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 TAC4Q86UU9 113 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 C7orf61Q8IZ16 206 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 PDZD8Q8NEN9 1154 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 OR2W6PQ8NHA6 318 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 ZNF461Q8TAF7 563 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 KCTD15Q96SI1 283 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 EPAS1Q99814 870 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 LBHD1Q9BQE6 289 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 EPB41L4BQ9H329 900 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 CENPHQ9H3R5 247 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 RWDD3Q9Y3V2 267 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 SLC4A7Q9Y6M7 1214 aa18.84■□□□□ 0.61
CCDC88C-203ENST00000389856 WDR27A2RRH5 827 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 SGK1O00141 431 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 NDUFAB1O14561 156 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 AGTP01019 485 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 CCR1P32246 355 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 ATXN1P54253 815 aaKnown RBP18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 MMRN1Q13201 1228 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 CA9Q16790 459 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 ACBD5Q5T8D3 534 aaPredicted RBP18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 MSANTD2Q6P1R3 559 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 CDKL3Q8IVW4 592 aaPredicted RBP18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 OVCA2Q8WZ82 227 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 HERVK_113Q902F9 699 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 CSPG4P5Q96PW8 444 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 VN1R3Q9BXE9 311 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 ADAM33Q9BZ11 813 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 PCDH9Q9HC56 1237 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 WDR6Q9NNW5 1121 aaKnown RBP18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 FNIP2Q9P278 1114 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 SLC27A5Q9Y2P5 690 aa18.83■□□□□ 0.61
CCDC88C-203ENST00000389856 A0A1W2PQH9 124 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 EEF2KO00418 725 aaKnown RBP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 C2CD2LO14523 706 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 IRAK2O43187 625 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 IGLV3-25P01717 112 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 IL4RP24394 825 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 ELF1P32519 619 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 ALDH1A3P47895 512 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 XRCC4Q13426 336 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 RAB33AQ14088 237 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PPP2R5DQ14738 602 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 VEPH1Q14D04 833 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 TMEM240Q5SV17 173 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 C16orf59Q7L2K0 433 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 TMCO2Q7Z6W1 182 aaPredicted RBP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 SCD5Q86SK9 330 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 VPS52Q8N1B4 723 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PLD5Q8N7P1 536 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PCDH19Q8TAB3 1148 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 ADAM32Q8TC27 787 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 RAD9AQ99638 391 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 NOVA2Q9UNW9 492 aaKnown RBP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 RAD54BQ9Y620 910 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 ALPK3Q96L96 1907 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms