RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 FUT10Q6P4F1 479 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TMC7Q7Z402 723 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TRABD2AQ86V40 505 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 UNC45BQ8IWX7 931 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TAB3Q8N5C8 712 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 NAT8LQ8N9F0 302 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 PYROXD1Q8WU10 500 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 MRPL38Q96DV4 380 aaKnown RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 SGSM3Q96HU1 749 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TSPAN18Q96SJ8 248 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TCF25Q9BQ70 676 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 PHACTR1Q9C0D0 580 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 LZTS1Q9Y250 596 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 SNX9Q9Y5X1 595 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 LRPAP1P30533 357 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 RPL9P32969 192 aaKnown RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 RGS7P49802 495 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 IL9RQ01113 521 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 UBE3AQ05086 875 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TFDP2Q14188 446 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 C15orf59Q2T9L4 293 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 PLPP4Q5VZY2 271 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 C9orf57Q5W0N0 161 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 MAGEB18Q96M61 343 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 MRPL45Q9BRJ2 306 aaKnown RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 ENTPD7Q9NQZ7 604 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 SENP1Q9P0U3 644 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 SLC24A2Q9UI40 661 aa16.11■□□□□ 0.17
CCDC40-202ENST00000374876 USP15Q9Y4E8 981 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-202ENST00000374876 CARNS1A5YM72 827 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 SMAPO00193 183 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 C2CD2LO14523 706 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 BANF1O75531 89 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 EFEMP2O95967 443 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 ROR1Q01973 937 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 MMRN1Q13201 1228 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 KRT81Q14533 505 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 FNBP1LQ5T0N5 605 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 PPP1R26Q5T8A7 1209 aaPredicted RBP16.1■□□□□ 0.17
CCDC40-202ENST00000374876 TRNP1Q6NT89 227 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 DARS2Q6PI48 645 aaKnown RBP16.1■□□□□ 0.17
CCDC40-202ENST00000374876 TRPM8Q7Z2W7 1104 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 ACOT1Q86TX2 421 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 CEP57Q86XR8 500 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 MAP7D3Q8IWC1 876 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 ATP11CQ8NB49 1132 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 MRRFQ96E11 262 aaKnown RBP16.1■□□□□ 0.17
CCDC40-202ENST00000374876 PIWIL1Q96J94 861 aaKnown RBP16.1■□□□□ 0.17
CCDC40-202ENST00000374876 SMC6Q96SB8 1091 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 TRABDQ9H4I3 376 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 TMEM51Q9NW97 253 aa16.1■□□□□ 0.17
CCDC40-202ENST00000374876 XPO7Q9UIA9 1087 aaKnown RBP16.1■□□□□ 0.17
CCDC40-202ENST00000374876 REV3LO60673 3130 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 HIDE1A8MVS5 230 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 SUN1O94901 812 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 CXCL14O95715 111 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 DESP17661 470 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 BASP1P80723 227 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 GAD2Q05329 585 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 DPYSL3Q14195 570 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 FAM171A1Q5VUB5 890 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 RBM23Q86U06 439 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 PDIK1LQ8N165 341 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 PAIP2Q9BPZ3 127 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 LMAN2LQ9H0V9 348 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 FAM49BQ9NUQ9 324 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 PSMC3IPQ9P2W1 217 aaPredicted RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 HESX1Q9UBX0 185 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 PIRO00625 290 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 SPAG7O75391 227 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 ENDOD1O94919 500 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 OAS1P00973 400 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 SOD2P04179 222 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 POU3F3P20264 500 aaPredicted RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 HNRNPH1P31943 449 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 STIP1P31948 543 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 GEMIN4P57678 1058 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 SNX16P57768 344 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 GPX6P59796 221 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 ATP11AP98196 1134 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 ZKSCAN8Q15776 578 aaPredicted RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 CCDC14Q49A88 953 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 TIGD5Q53EQ6 642 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 RAB6CQ53S08 254 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 PMF1Q6P1K2 205 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 SCYL2Q6P3W7 929 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 NPNTQ6UXI9 565 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 CYP4V2Q6ZWL3 525 aaPredicted RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 ZC3H18Q86VM9 953 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 RAB6CQ9H0N0 254 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 ZBP1Q9H171 429 aa16.09■□□□□ 0.17
CCDC40-202ENST00000374876 NGRNQ9NPE2 291 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 SMG5Q9UPR3 1016 aaKnown RBP16.09■□□□□ 0.17
CCDC40-202ENST00000374876 TMEM189-UBE2V1I3L0A0 370 aa16.08■□□□□ 0.16
CCDC40-202ENST00000374876 PER2O15055 1255 aa16.08■□□□□ 0.16
CCDC40-202ENST00000374876 SPTLC1O15269 473 aa16.08■□□□□ 0.16
CCDC40-202ENST00000374876 PRPF4O43172 522 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC40-202ENST00000374876 SETSIPP0DME0 302 aa16.08■□□□□ 0.16
CCDC40-202ENST00000374876 SDC4P31431 198 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms