RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CARNMT1Q8N4J0 409 aa8.86□□□□□ -0.99
SYNE1-206ENST00000367253 OR6P1Q8NGX9 317 aa8.86□□□□□ -0.99
SYNE1-206ENST00000367253 ACAT2Q9BWD1 397 aa8.86□□□□□ -0.99
SYNE1-206ENST00000367253 RBAKQ9NYW8 714 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-206ENST00000367253 WDR35Q9P2L0 1181 aa8.86□□□□□ -0.99
SYNE1-206ENST00000367253 C2orf81A6NN90 581 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 FAM25AB3EWG3 89 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 FAM25CB3EWG5 89 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 FAM25GB3EWG6 89 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 GUCA1CO95843 209 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 RHOCP08134 193 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PIM1P11309 404 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 COPS2P61201 443 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 GFPT1Q06210 699 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 XRCC4Q13426 336 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ZCWPW2Q504Y3 356 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ZC2HC1CQ53FD0 456 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ZNF366Q8N895 744 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 DDX1Q92499 740 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 RBM41Q96IZ5 413 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PAIP1Q9H074 479 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 GTSE1Q9NYZ3 720 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 UBA6A0AVT1 1052 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 FAM196BA6NMK8 535 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 E7EWF7 191 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 MTSS1O43312 755 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SSX5O60225 188 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D4O60343 1298 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 NDUFS3O75489 264 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 GUCY1A2P33402 732 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 QRICH1Q2TAL8 776 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SPRYD7Q5W111 196 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PYHIN1Q6K0P9 492 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 UGT3A1Q6NUS8 523 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ATPAF2Q8N5M1 289 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 CCDC74BQ96LY2 380 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PLEKHG4BQ96PX9 1271 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 KCNK16Q96T55 309 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 CORO1BQ9BR76 489 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 FAM213AQ9BRX8 229 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 MOV10L1Q9BXT6 1211 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 EPN3Q9H201 632 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PCIF1Q9H4Z3 704 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SRRDQ9UH36 339 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 AURKCQ9UQB9 309 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SIK3Q9Y2K2 1263 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 AKAP12Q02952 1782 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 UMODL1Q5DID0 1318 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 RHPN2P1A8MT19 583 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ERCC1P07992 297 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 USP17L7P0C7H9 530 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 G0S2P27469 103 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PPIDQ08752 370 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SF3B4Q15427 424 aaKnown RBP eCLIP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SCARA3Q6AZY7 606 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ZYG11AQ6WRX3 759 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 MAGEC3Q8TD91 643 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 TMC2Q8TDI7 906 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 TIFAQ96CG3 184 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 LRRC39Q96DD0 335 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 RPRD1AQ96P16 312 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 MCCC2Q9HCC0 563 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 DDX18Q9NVP1 670 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 DEC1Q9P2X7 70 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 RPS6KB2Q9UBS0 482 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SNX24Q9Y343 169 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PCDHA13Q9Y5I0 950 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 KPNA3O00505 521 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 CASKO14936 926 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 IFNA14P01570 189 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 TRIM49P0CI25 452 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 TRIM49CP0CI26 452 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 KITP10721 976 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 EIF4A3P38919 411 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 PRKG2Q13237 762 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 EOGTQ5NDL2 527 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SNAP47Q5SQN1 464 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 BBS7Q8IWZ6 715 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 GPD1LQ8N335 351 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 AGBL1Q96MI9 1066 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 RIOK2Q9BVS4 552 aaKnown RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 NHEJ1Q9H9Q4 299 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-206ENST00000367253 SLC39A2Q9NP94 309 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 IL1RAPL1Q9NZN1 696 aa8.85□□□□□ -0.99
SYNE1-206ENST00000367253 ABHD14A-ACY1A0A1B0GW23 586 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 URADA6NGE7 173 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 FGGP02679 453 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 PRDX5P30044 214 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TCF7P36402 384 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 GLUD2P49448 558 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 VBP1P61758 197 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 POLNQ7Z5Q5 900 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CDKL3Q8IVW4 592 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SCAIQ8N9R8 606 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TTC29Q8NA56 475 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 NDNQ99608 321 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CLEC4MQ9H2X3 399 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 POLR3BQ9NW08 1133 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SCN3BQ9NY72 215 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 PCSK1NQ9UHG2 260 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms