RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SMAD1Q15797 465 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 MDH1BQ5I0G3 518 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 CLEC20AQ6ZU45 233 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 CTU1Q7Z7A3 348 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 KIRREL3Q8IZU9 778 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 C2orf69Q8N8R5 385 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 ADAM32Q8TC27 787 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 UTP4Q969X6 686 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 TXLNGQ9NUQ3 528 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 TIMM13Q9Y5L4 95 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 C17orf102A2RUQ5 167 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 DGKIO75912 1065 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 TROVE2P10155 538 aaKnown RBP eCLIP19.99■□□□□ 0.794e-7■□□□□ 9
COL9A3-201ENST00000343916 PTPN1P18031 435 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 AP1B1Q10567 949 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 RIPK1Q13546 671 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 MROH9Q5TGP6 573 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 GSDMBQ8TAX9 411 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 IQCGQ9H095 443 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 SLC17A6Q9P2U8 582 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 C2CD2LO14523 706 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 TRDMT1O14717 391 aaKnown RBP19.98■□□□□ 0.79
COL9A3-201ENST00000343916 TPSB2P20231 275 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 WARSP23381 471 aaKnown RBP19.98■□□□□ 0.79
COL9A3-201ENST00000343916 SERPINB4P48594 390 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 CPT1AP50416 773 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 CBLBQ13191 982 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 SEMA5AQ13591 1074 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 TPSAB1Q15661 275 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 PDCD7Q8N8D1 485 aaKnown RBP19.98■□□□□ 0.79
COL9A3-201ENST00000343916 RNF169Q8NCN4 708 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 AGAP11Q8TF27 550 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 RNF139Q8WU17 664 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 LRRC39Q96DD0 335 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 MED10Q9BTT4 135 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 LRRC4Q9HBW1 653 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 SEPT10Q9P0V9 454 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 HMX2A2RU54 273 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 C2orf71A6NGG8 1288 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 RFPL1O75677 317 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 TOP3BO95985 862 aaKnown RBP19.98■□□□□ 0.79
COL9A3-201ENST00000343916 SLC8A3P57103 927 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 BSPRYQ5W0U4 402 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 CASC4Q6P4E1 433 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 TOP6BLQ8N6T0 577 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 PIGVQ9NUD9 493 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 ZFP69BQ9UJL9 534 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 ZNF180Q9UJW8 692 aa19.98■□□□□ 0.79
COL9A3-201ENST00000343916 A0A0A0MRY4 1105 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 WDR27A2RRH5 827 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 NRP1O14786 923 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 PRKD1Q15139 912 aaPredicted RBP19.97■□□□□ 0.79
COL9A3-201ENST00000343916 NME8Q8N427 588 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 COLGALT1Q8NBJ5 622 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 CCNYQ8ND76 341 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 SPATA13Q96N96 652 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 KRT82Q9NSB4 513 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 DONSONQ9NYP3 566 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.97■□□□□ 0.79
COL9A3-201ENST00000343916 DAB1O75553 588 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 MLH1P40692 756 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 TKTL1P51854 596 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 CLNS1AP54105 237 aaKnown RBP19.97■□□□□ 0.79
COL9A3-201ENST00000343916 NBPF20Q3BBV1 942 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 TLDC1Q6P9B6 456 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 C4orf22Q6V702 233 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 CHSY1Q86X52 802 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 SIX6OS1Q8N1H7 587 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 ARMC2Q8NEN0 867 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 P2RY11Q96G91 374 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 OXNAD1Q96HP4 312 aaPredicted RBP19.97■□□□□ 0.79
COL9A3-201ENST00000343916 PPP1R10Q96QC0 940 aaKnown RBP19.97■□□□□ 0.79
COL9A3-201ENST00000343916 KCNK16Q96T55 309 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 NPY6RQ99463 290 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 TRIM55Q9BYV6 548 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 AP5M1Q9H0R1 490 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 RRAGCQ9HB90 399 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 PCMTD2Q9NV79 361 aa19.97■□□□□ 0.79
COL9A3-201ENST00000343916 DDX43Q9NXZ2 648 aaKnown RBP19.97■□□□□ 0.79
COL9A3-201ENST00000343916 MYADML2A6NDP7 307 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 RNF103O00237 685 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 AMHP03971 560 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 SESN2P58004 480 aaPredicted RBP19.96■□□□□ 0.79
COL9A3-201ENST00000343916 LPPQ93052 612 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 SLC7A6OSQ96CW6 309 aaPredicted RBP19.96■□□□□ 0.79
COL9A3-201ENST00000343916 KCNK13Q9HB14 408 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 CRTAC1Q9NQ79 661 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 TMEM30AQ9NV96 361 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 PLLPQ9Y342 182 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 PCDHA11Q9Y5I1 949 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 FAM159BA6NKW6 160 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 FAM72CH0Y354 149 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 NOS2P35228 1153 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 FKBP1BP68106 108 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 FAM72AQ5TYM5 149 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 FAM72DQ6L9T8 149 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 GPRIN1Q7Z2K8 1008 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 CLNKQ7Z7G1 428 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 FAM72BQ86X60 149 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 GSTCDQ8NEC7 633 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms