RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MAK16Q9BXY0 300 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 LRRC3Q9BY71 257 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 IL21Q9HBE4 155 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 ARHGEF4Q9NR80 690 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 TRPM5Q9NZQ8 1165 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 MARCH2Q9P0N8 246 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 NEU2Q9Y3R4 380 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 CHD9Q3L8U1 2897 aa15.46■□□□□ 0.06
CCDC88C-202ENST00000334448 LPXNO60711 386 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 ZNF189O75820 626 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 ECEL1O95672 775 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 OAS1P00973 400 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 F11P03951 625 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 C8AP07357 584 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 PFKLP17858 780 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 KLRC2P26717 231 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 EPHA5P54756 1037 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 TBX4P57082 545 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 BYSLQ13895 437 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 PABPC1LQ4VXU2 614 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 PPP6R3Q5H9R7 873 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 HECTD3Q5T447 861 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 RFX8Q6ZV50 586 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 TMEM150AQ86TG1 271 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 TMC8Q8IU68 726 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 IFT20Q8IY31 132 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 ACTL9Q8TC94 416 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 SLC22A17Q8WUG5 538 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 HNRNPLLQ8WVV9 542 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 ATG4AQ8WYN0 398 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 ZNF512Q96ME7 567 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 EPAS1Q99814 870 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 PBX4Q9BYU1 374 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 FAM129AQ9BZQ8 928 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 RAB17Q9H0T7 212 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 EPC1Q9H2F5 836 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 SFMBT1Q9UHJ3 866 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 RASAL2Q9UJF2 1139 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 NEU3Q9UQ49 428 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 RAD54BQ9Y620 910 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 CEP290O15078 2479 aa15.45■□□□□ 0.06
CCDC88C-202ENST00000334448 CLUHO75153 1309 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 SYNJ2BP-COX16A0A087WUM0 186 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 DCLK1O15075 740 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 TTI1O43156 1089 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 MSI1O43347 362 aaKnown RBP15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 CLASP2O75122 1294 aaKnown RBP15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 GAS8O95995 478 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 HNRNPA1P09651 372 aaKnown RBP eCLIP15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 GOT1P17174 413 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 IRS1P35568 1242 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 VSNL1P62760 191 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 OTUD4Q01804 1114 aaKnown RBP15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 EFEMP1Q12805 493 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 XRCC4Q13426 336 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 GPM6BQ13491 265 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 CUL1Q13616 776 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 PTK6Q13882 451 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 PAFAH1B3Q15102 231 aaKnown RBP15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 LLGL1Q15334 1064 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 C10orf120Q5SQS8 335 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 NUGGCQ68CJ6 796 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 DUPD1Q68J44 220 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 CCDC105Q8IYK2 499 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 PYROXD2Q8N2H3 581 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 AZIN2Q96A70 460 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 ERP44Q9BS26 406 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 CCSER2Q9H7U1 834 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 COX16Q9P0S2 106 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 DPP7Q9UHL4 492 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 DNMT3LQ9UJW3 386 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 DNPEPQ9ULA0 475 aa15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 MAGED2Q9UNF1 606 aaPredicted RBP15.44■□□□□ 0.06
CCDC88C-202ENST00000334448 SOBPA7XYQ1 873 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 FAM72CH0Y354 149 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 EEF2KO00418 725 aaKnown RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 MCF2LO15068 1137 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 PAGE1O75459 146 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 ZMYND10O75800 440 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 FGF19O95750 216 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 TBX18O95935 607 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 APOEP02649 317 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 LRG1P02750 347 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 PECAM1P16284 738 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 ATP5C1P36542 298 aaKnown RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 MLLT6P55198 1093 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 TAF12Q16514 161 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 FAM72AQ5TYM5 149 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 NCBP2-AS2Q69YL0 99 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 FAM72DQ6L9T8 149 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 CCNI2Q6ZMN8 369 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 FAM72BQ86X60 149 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 TNS4Q8IZW8 715 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 ALLCQ8N6M5 410 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 CCHCR1Q8TD31 782 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 P3H4Q92791 437 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 RNF34Q969K3 372 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 PLD4Q96BZ4 506 aa15.43■□□□□ 0.06
CCDC88C-202ENST00000334448 RTP4Q96DX8 246 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms