RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 KLRC2P26717 231 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CSTF2P33240 577 aaKnown RBP eCLIP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 NAMPTP43490 491 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SLC6A11P48066 632 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 BCAT1P54687 386 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 RRADP55042 308 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SURF1Q15526 300 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DIXDC1Q155Q3 683 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MSS51Q4VC12 460 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 RIPPLY2Q5TAB7 128 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CYP4A22Q5TCH4 519 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ZC3H18Q86VM9 953 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 HIPK1Q86Z02 1210 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ZNF295-AS1Q8N0V1 137 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 AMER2Q8N7J2 671 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FRS2Q8WU20 508 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KIF1BPQ96EK5 621 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DOCK6Q96HP0 2047 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CCDC136Q96JN2 1154 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 RPGRIP1Q96KN7 1286 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CNDP2Q96KP4 475 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TARS2Q9BW92 718 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ASPSCR1Q9BZE9 553 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DNAI2Q9GZS0 605 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DNAJC25Q9H1X3 360 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ASB7Q9H672 318 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 IFT122Q9HBG6 1241 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KCNMB3Q9NPA1 279 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 IL17RBQ9NRM6 502 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 QPCTLQ9NXS2 382 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SUCOQ9UBS9 1254 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 B4GALT7Q9UBV7 327 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ADGRE2Q9UHX3 823 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CYTH4Q9UIA0 394 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PALD1Q9ULE6 856 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 HBS1LQ9Y450 684 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MFHAS1Q9Y4C4 1052 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MYH11P35749 1972 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DOCK4Q8N1I0 1966 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 VPS37CA5D8V6 355 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 IGLON5A6NGN9 336 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TGFBR3LH3BV60 316 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 AGRPO00253 132 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PIRO00625 290 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 IPO8O15397 1037 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 RAD21O60216 631 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TSPAN1O60635 241 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 AP1G2O75843 785 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CSF2P04141 144 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 HBQ1P09105 142 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ALPIP09923 528 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PPIAL4GP0DN37 164 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ALAS1P13196 640 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 POLR2CP19387 275 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 RABIFP47224 123 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ARCN1P48444 511 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MCL1Q07820 350 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CHAF1BQ13112 559 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DOC2BQ14184 412 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MCM6Q14566 821 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SF3A2Q15428 464 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TSNAXIP1Q2TAA8 658 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FAM174BQ3ZCQ3 159 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TMEM52BQ4KMG9 183 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TRIM61Q5EBN2 209 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TAF7LQ5H9L4 462 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CENPPQ6IPU0 288 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CC2D1AQ6P1N0 951 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 BLOC1S3Q6QNY0 202 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 C9orf139Q6ZV77 190 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TECPR1Q7Z6L1 1165 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DCP1BQ8IZD4 617 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 LINC00482Q8N8I6 264 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 IL17RCQ8NAC3 791 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SPRYD3Q8NCJ5 442 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 GPR156Q8NFN8 814 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CCDC12Q8WUD4 166 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TGFBRAP1Q8WUH2 860 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KLHL6Q8WZ60 621 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FERMT2Q96AC1 680 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DTNBP1Q96EV8 351 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 EXOC2Q96KP1 924 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 GCNAQ96QF7 691 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PPP1R9BQ96SB3 815 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CXCL16Q9H2A7 254 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PDGFCQ9NRA1 345 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 STMN3Q9NZ72 180 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CA14Q9ULX7 337 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TRIM33Q9UPN9 1127 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 POLR3KQ9Y2Y1 108 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MTF2Q9Y483 593 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SLC30A1Q9Y6M5 507 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DNAH17Q9UFH2 4485 aa1.67□□□□□ -2.14
LINC00643-201ENST00000334389 TRAV19A0A0A6YYK7 116 aa1.67□□□□□ -2.14
LINC00643-201ENST00000334389 SCO2A0A1W2PP80 73 aa1.67□□□□□ -2.14
LINC00643-201ENST00000334389 MYMKA6NI61 221 aa1.67□□□□□ -2.14
LINC00643-201ENST00000334389 SMAPO00193 183 aa1.67□□□□□ -2.14
LINC00643-201ENST00000334389 EIF3FO00303 357 aaPredicted RBP1.67□□□□□ -2.14
LINC00643-201ENST00000334389 FAM189A1O60320 539 aa1.67□□□□□ -2.14
LINC00643-201ENST00000334389 CSDE1O75534 798 aaKnown RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms