RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HAPLN2Q9GZV7 340 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 ST6GALNAC4Q9H4F1 302 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 Q9H521 79 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 NRDE2Q9H7Z3 1164 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 PI4KBQ9UBF8 816 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 RAB26Q9ULW5 256 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 HEY1Q9Y5J3 304 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 MYO18AQ92614 2054 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 GREB1LQ9C091 1923 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 C7orf72A4D263 438 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 ZNF195O14628 629 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 CSPG5O95196 566 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 MLH1P40692 756 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 SP4Q02446 784 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 BTG3Q14201 252 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 FLOT2Q14254 428 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 PIGHQ14442 188 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 RARS2Q5T160 578 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 GMCL1P1Q8NEA9 526 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 BHLHE22Q8NFJ8 381 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 TSPAN14Q8NG11 270 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 TEKT1Q969V4 418 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 PGLYRP2Q96PD5 576 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 TSPAN18Q96SJ8 248 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 RIT2Q99578 217 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 EBF1Q9UH73 591 aa13.86□□□□□ -0.19
CCDC88C-201ENST00000331194 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 NEMP1O14524 444 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 KCNN4O15554 427 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 ENTPD3O75355 529 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 NDST2P52849 883 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 EML3Q32P44 896 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 SCARA5Q6ZMJ2 495 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 Q6ZNX1 250 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 PATL1Q86TB9 770 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 TMEM130Q8N3G9 435 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 OR52B2Q96RD2 323 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 WRNIP1Q96S55 665 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 C6orf203Q9P0P8 240 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 ARHGAP26Q9UNA1 814 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 FZD1Q9UP38 647 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 SLC15A5A6NIM6 579 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 WDR64B1ANS9 1081 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 PLOD2O00469 737 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 APOEP02649 317 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 PTPN7P35236 360 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 CRKP46108 304 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 CTBSQ01459 385 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 ROR1Q01973 937 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 KLF10Q13118 480 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 TNS4Q8IZW8 715 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 NLRP4Q96MN2 994 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 KLHL32Q96NJ5 620 aa13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 WDR55Q9H6Y2 383 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-201ENST00000331194 LY75O60449 1722 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 ZC3H11AO75152 810 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 KRT38O76015 456 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 PPP2R5DQ14738 602 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 PCLAFQ15004 111 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 LGSNQ5TDP6 509 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 USP37Q86T82 979 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 TICAM1Q8IUC6 712 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 COG4Q9H9E3 785 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 CYTH4Q9UIA0 394 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 SORCS3Q9UPU3 1222 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 UBR3Q6ZT12 1888 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 NFIBO00712 420 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 RNASEH2AO75792 299 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 STAM2O75886 525 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 CCNE2O96020 404 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 OSBPP22059 807 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 CA8P35219 290 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 TCF7P36402 384 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 DPP6P42658 865 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 CD300CQ08708 224 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 CCDC92Q53HC0 331 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 FASTKD5Q7L8L6 764 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 SNX32Q86XE0 403 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 ERI1Q8IV48 349 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 DEPDC1BQ8WUY9 529 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 KBTBD7Q8WVZ9 684 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 MARK4Q96L34 752 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 KCNK16Q96T55 309 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 SELENONQ9NZV5 590 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 SSX2IPQ9Y2D8 614 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 SH3PXD2BA1X283 911 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 TPP1O14773 563 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 ALDOAP04075 364 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 KRT3P12035 628 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 ENO3P13929 434 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 PRKCHP24723 683 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 RBL1P28749 1068 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 SLC5A3P53794 718 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 MRPS9P82933 396 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 PRKG1Q13976 671 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 CEACAM7Q14002 265 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 PDE1CQ14123 709 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 TKFCQ3LXA3 575 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 MYO1HQ8N1T3 1032 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 ZNF781Q8N8C0 355 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms