RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 HSPH1Q92598 858 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 DUSP16Q9BY84 665 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 DCLRE1BQ9H816 532 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 RGS18Q9NS28 235 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 SAE1Q9UBE0 346 aaPredicted RBP13.52□□□□□ -0.25
CPNE1-201ENST00000317677 PTPRDP23468 1912 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 NVLO15381 856 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 TMCC1O94876 653 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 TJP3O95049 919 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 KLRC2P26717 231 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 ATXN1P54253 815 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 HDAC4P56524 1084 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 MMRN1Q13201 1228 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 KPNB1Q14974 876 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 OASLQ15646 514 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 CLLU1OSQ5K130 101 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 DSTYKQ6XUX3 929 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 ZMIZ2Q8NF64 920 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 DIS3LQ8TF46 1054 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 HASPINQ8TF76 798 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 FAM172AQ8WUF8 416 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 DYDC1Q8WWB3 177 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 IRGQQ8WZA9 623 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 GRAMD1AQ96CP6 724 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 HSFY1Q96LI6 401 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 GBP5Q96PP8 586 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 NUDCD1Q96RS6 583 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 SELENOSQ9BQE4 189 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 CYLDQ9NQC7 956 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 AAASQ9NRG9 546 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 GPATCH2LQ9NWQ4 482 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 STOML1Q9UBI4 398 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 WDR37Q9Y2I8 494 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 EIF4E1BA6NMX2 242 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 RGS16O15492 202 aaPredicted RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 FAM200BP0CF97 657 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 NPR3P17342 541 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 VHLP40337 213 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 NDUFV1P49821 464 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 CDK7P50613 346 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 DYNLT1P63172 113 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 TUSC3Q13454 348 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 CA9Q16790 459 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 SPDYAQ5MJ70 313 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 OTUD1Q5VV17 481 aaPredicted RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 DRICH1Q6PGQ1 229 aaPredicted RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 BBS12Q6ZW61 710 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 LONP2Q86WA8 852 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 ZDHHC17Q8IUH5 632 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 TMEM86AQ8N2M4 240 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 SLC35B2Q8TB61 432 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 NR1H4Q96RI1 486 aaPredicted RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 MAGEB5Q9BZ81 275 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 ETNK1Q9HBU6 452 aa13.51□□□□□ -0.25
CPNE1-201ENST00000317677 NGRNQ9NPE2 291 aaKnown RBP13.51□□□□□ -0.25
CPNE1-201ENST00000317677 MKI67P46013 3256 aaKnown RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 ZNF638Q14966 1978 aaKnown RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 TET1Q8NFU7 2136 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 TMEM221A6NGB7 291 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 TRAFD1O14545 582 aaPredicted RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 CST8O60676 142 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 ETS1P14921 441 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 IL4RP24394 825 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 SCNN1AP37088 669 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 VPS41P49754 854 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 PITX1P78337 314 aaPredicted RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 PLCB3Q01970 1234 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 PPARDQ03181 441 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 ADIGQ0VDE8 80 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 SCN5AQ14524 2016 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 ZRSR2Q15696 482 aaKnown RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 TCTN1Q2MV58 587 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 SYDE1Q6ZW31 735 aaPredicted RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 TAOK1Q7L7X3 1001 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 GPRIN1Q7Z2K8 1008 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 CENPIQ92674 756 aaPredicted RBP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 PGBD4Q96DM1 585 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 PCED1BQ96HM7 432 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 SMOQ99835 787 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 SPATA16Q9BXB7 569 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 RHOBTB2Q9BYZ6 727 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 OCEL1Q9H607 264 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 C10orf88Q9H8K7 445 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.5□□□□□ -0.25
CPNE1-201ENST00000317677 WHRNQ9P202 907 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 EFR3BQ9Y2G0 817 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 ATP8A1Q9Y2Q0 1164 aa13.5□□□□□ -0.25
CPNE1-201ENST00000317677 ALPK3Q96L96 1907 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 COL4A4P53420 1690 aaPredicted RBP13.49□□□□□ -0.25
CPNE1-201ENST00000317677 SMAPO00193 183 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 DDHD2O94830 711 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 ZSCAN5DPP0CG00 497 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 SDC4P31431 198 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 CHKAP35790 457 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 CETN2P41208 172 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 PTPN9P43378 593 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 LHX1P48742 406 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 VCPP55072 806 aaKnown RBP13.49□□□□□ -0.25
CPNE1-201ENST00000317677 MAP3K7CLP57077 242 aa13.49□□□□□ -0.25
CPNE1-201ENST00000317677 FAM189BP81408 668 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms