RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FCHO1O14526 889 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CLDN3O15551 220 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 PSMD3O43242 534 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MED24O75448 989 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 APOC2P02655 101 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FEN1P39748 380 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 ABL2P42684 1182 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SNX17Q15036 470 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ALFQ53S48 1182 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FKBP1CQ5VVH2 108 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 DPY19L2Q6NUT2 758 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TTC29Q8NA56 475 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 LINC00116Q8NCU8 138 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MAGED4Q96JG8 741 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SPATA16Q9BXB7 569 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 C12orf4Q9NQ89 552 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 GIN1Q9NXP7 522 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 GLI3P10071 1580 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 A0A0B4J269 797 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 NEMP1O14524 444 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 RIMBP2O15034 1052 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MSH4O15457 936 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF12P17014 697 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CDH2P19022 906 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 GSTT1P30711 240 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FDFT1P37268 417 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CCNHP51946 323 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 ITGADQ13349 1161 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TUBB3Q13509 450 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 DPYSQ14117 519 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TFDP3Q5H9I0 405 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 RNASE11Q8TAA1 199 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 DPF3Q92784 378 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 GPRASP2Q96D09 838 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SHISA4Q96DD7 197 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FBXL18Q96ME1 805 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ECSITQ9BQ95 431 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 KRT84Q9NSB2 600 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF624Q9P2J8 865 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 MATN2O00339 956 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MEIS1O00470 390 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TEX28O15482 410 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 KRT36O76013 467 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 IL6P05231 212 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MYCLP12524 364 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 PPARGP37231 505 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 CHN2P52757 468 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF746Q6NUN9 644 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 INTS5Q6P9B9 1019 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 IZUMO1Q8IYV9 350 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZBED8Q8IZ13 594 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 KCTD6Q8NC69 237 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 DYNLL2Q96FJ2 89 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 PAFAH2Q99487 392 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 PLGRKTQ9HBL7 147 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 NPHS2Q9NP85 383 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 EHD3Q9NZN3 535 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 RABGEF1Q9UJ41 708 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SNCAIPQ9Y6H5 919 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF862O60290 1169 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 DNAJB5O75953 348 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FKBP9O95302 570 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SERPINE1P05121 402 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 OSBPP22059 807 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 RFC5P40937 340 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ARSEP51690 589 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SLC18A2Q05940 514 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF211Q13398 564 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 ABCB5Q2M3G0 1257 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ANGEL2Q5VTE6 544 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 RBM46Q8TBY0 533 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 HDAC2Q92769 488 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 EPB41L4BQ9H329 900 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FKBP14Q9NWM8 211 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CCDC59Q9P031 241 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 HEY2Q9UBP5 337 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 PSMD13Q9UNM6 376 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TFR2Q9UP52 801 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CARD8Q9Y2G2 431 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 WDR37Q9Y2I8 494 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 RAD54BQ9Y620 910 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CCDC182A6NF36 153 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SNTNA6NMZ2 147 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 F5H423 210 aaPredicted RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 PARNO95453 639 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 CYP1A1P04798 512 aaPredicted RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 CYP2C9P11712 490 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 PAX3P23760 479 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 HMOX2P30519 316 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CASP5P51878 434 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SCARA3Q6AZY7 606 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ERICH5Q6P6B1 374 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 IKBIPQ70UQ0 350 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 LPCAT2Q7L5N7 544 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ZCCHC7Q8N3Z6 543 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 APPL2Q8NEU8 664 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SCG3Q8WXD2 468 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 AP1S3Q96PC3 154 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 DENND2DQ9H6A0 471 aaPredicted RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 OSGEPQ9NPF4 335 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms