RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 RAB41Q5JT25 222 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 RTP2Q5QGT7 225 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 DENND2CQ68D51 928 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 CCDC110Q8TBZ0 833 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 SEPT8Q92599 483 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 RNF34Q969K3 372 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 PAWRQ96IZ0 340 aaKnown RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 RUNDC3BQ96NL0 473 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 RBM15Q96T37 977 aaKnown RBP eCLIP8.09□□□□□ -1.11
NEK3-207ENST00000617054 NPY6RQ99463 290 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 TMEM106CQ9BVX2 250 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 PIH1D1Q9NWS0 290 aaKnown RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 ADAM28Q9UKQ2 775 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 FZD10Q9ULW2 581 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 MYO7AQ13402 2215 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 OPA1O60313 960 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 MYZAPP0CAP1 466 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 SRGAP2BP0DMP2 458 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 ACRP10323 421 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 PTPN7P35236 360 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 IFI35P80217 286 aaPredicted RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 GUCA2AQ02747 115 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 CTXN3Q4LDR2 81 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 FNBP1LQ5T0N5 605 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 HIBCHQ6NVY1 386 aaPredicted RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 EIF1ADQ8N9N8 165 aaKnown RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 NKD2Q969F2 451 aaPredicted RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 FTHL17Q9BXU8 183 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 SAYSD1Q9NPB0 183 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 DMAP1Q9NPF5 467 aaPredicted RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 OSER1Q9NX31 292 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 LCMT1Q9UIC8 334 aa8.09□□□□□ -1.11
NEK3-207ENST00000617054 DRG1Q9Y295 367 aaKnown RBP8.09□□□□□ -1.11
NEK3-207ENST00000617054 MDM4O15151 490 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 ADAM12O43184 909 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 RARGP13631 454 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 PRMT2P55345 433 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 ROR1Q01973 937 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 TMEM92Q6UXU6 159 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 CCDC13Q8IYE1 715 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 FAM76AQ8TAV0 307 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 DEPDC1BQ8WUY9 529 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 CPT1BQ92523 772 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 VWCEQ96DN2 955 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 DNAI2Q9GZS0 605 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 NMUR1Q9HB89 426 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 TMBIM4Q9HC24 238 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 CSNK1G1Q9HCP0 422 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 WDR6Q9NNW5 1121 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 MARCH5Q9NX47 278 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 XPO7Q9UIA9 1087 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 TPX2Q9ULW0 747 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 VWA8A3KMH1 1905 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 DNALI1O14645 258 aaPredicted RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 DAB1O75553 588 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 MOCS2O96007 188 aaPredicted RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 ZNF16P17020 682 aaPredicted RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 DESP17661 470 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 RDXP35241 583 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 MAGOHP61326 146 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 GUCY1A3Q02108 690 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 PDK2Q15119 407 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 NOMO1Q15155 1222 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 SMAD1Q15797 465 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 DPYSL2Q16555 572 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 KCNT2Q6UVM3 1135 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 ZBED8Q8IZ13 594 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.08□□□□□ -1.12
NEK3-207ENST00000617054 NT5C3BQ969T7 300 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 UROC1Q96N76 676 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 SEPT5Q99719 369 aaPredicted RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 TRIM56Q9BRZ2 755 aaKnown RBP8.08□□□□□ -1.12
NEK3-207ENST00000617054 TKTL2Q9H0I9 626 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 USP29Q9HBJ7 922 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 CNGB3Q9NQW8 809 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 TMEM39AQ9NV64 488 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 WBP1LQ9NX94 342 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 DTLQ9NZJ0 730 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 SEPT10Q9P0V9 454 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 PRDM4Q9UKN5 801 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 PRUNE2Q8WUY3 3088 aa8.08□□□□□ -1.12
NEK3-207ENST00000617054 GOLGA6L10A6NI86 522 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 TMEM63AO94886 807 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 GALTP07902 379 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 CPB1P15086 417 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 CREB1P16220 341 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 LMNB2Q03252 620 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 RNASEH2BQ5TBB1 312 aaKnown RBP8.07□□□□□ -1.12
NEK3-207ENST00000617054 NCBP2-AS2Q69YL0 99 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 DRICH1Q6PGQ1 229 aaPredicted RBP8.07□□□□□ -1.12
NEK3-207ENST00000617054 RNF19BQ6ZMZ0 732 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 ZNF771Q7L3S4 317 aaPredicted RBP8.07□□□□□ -1.12
NEK3-207ENST00000617054 STRADAQ7RTN6 431 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 TAC4Q86UU9 113 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 CCNYQ8ND76 341 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 MDM1Q8TC05 714 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 ATP6V1G3Q96LB4 118 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 SLC2A13Q96QE2 648 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 COLEC11Q9BWP8 271 aa8.07□□□□□ -1.12
NEK3-207ENST00000617054 WDCPQ9H6R7 721 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms