RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PRR33A8MZF0 331 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 LSM8O95777 96 aaKnown RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 IGLV3-25P01717 112 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 PFKLP17858 780 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 PRKCIP41743 596 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 RPL7AP62424 266 aaKnown RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ZBED6P86452 979 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 PFKPQ01813 784 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 TRIP4Q15650 581 aaPredicted RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 C15orf59Q2T9L4 293 aaPredicted RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 SLC26A9Q7LBE3 791 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ZNF677Q86XU0 584 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 FBXL6Q8N531 539 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ZNF276Q8N554 614 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 FAM3CQ92520 227 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ERLEC1Q96DZ1 483 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 PIGVQ9NUD9 493 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ADAMTS1Q9UHI8 967 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 CEP83Q9Y592 693 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 GVINP1Q7Z2Y8 2422 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 PTPRZ1P23471 2315 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 KNL1Q8NG31 2342 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 A0A087X0T9 212 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 A0A1W2PQJ5 194 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 NEDD8-MDP1E9PL57 170 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 CAPN9O14815 690 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 EGFP01133 1207 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 IGLV3-27P01718 113 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 FAM228BP0C875 321 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 RRM1P23921 792 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 GALK1P51570 392 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 IRAK1P51617 712 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ZNF75DP51815 510 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 NME3Q13232 169 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ARID5BQ14865 1188 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 TDRD12Q587J7 1177 aaKnown RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 FAM133BQ5BKY9 247 aaKnown RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 DAB2IPQ5VWQ8 1189 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ASTLQ6HA08 431 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 FSTL4Q6MZW2 842 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 TOGARAM2Q6ZUX3 1019 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ARHGAP18Q8N392 663 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 IPO4Q8TEX9 1081 aaKnown RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ATP2A3Q93084 1043 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 SLC39A13Q96H72 371 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 TBCBQ99426 244 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 NUCKS1Q9H1E3 243 aaKnown RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 TRPV5Q9NQA5 729 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ADAM22Q9P0K1 906 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 LUC7L2Q9Y383 392 aaKnown RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 NUMA1Q14980 2115 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ABCA7Q8IZY2 2146 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 IRAK2O43187 625 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 AOC1P19801 751 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 RFC1P35251 1148 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 NSFP46459 744 aaKnown RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 OGDHQ02218 1023 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 KDSRQ06136 332 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 TBX2Q13207 712 aaPredicted RBP14.05□□□□□ -0.16
LINC00540-202ENST00000616974 ANO4Q32M45 955 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 WFDC5Q8TCV5 224 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 C1QTNF1Q9BXJ1 281 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 SPHK2Q9NRA0 654 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 DDIT4Q9NX09 232 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 MYO6Q9UM54 1294 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 DAAM1Q9Y4D1 1078 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 SPAG17Q6Q759 2223 aa14.05□□□□□ -0.16
LINC00540-202ENST00000616974 FAM186AA6NE01 2351 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 HSF2BPO75031 334 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 CHRNB1P11230 501 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 TNFAIP3P21580 790 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 AVPR2P30518 371 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 TBX4P57082 545 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 ATP11AP98196 1134 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 PDGFRLQ15198 375 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 CDO1Q16878 200 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 EMC10Q5UCC4 262 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 MCOLN2Q8IZK6 566 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 PRICKLE1Q96MT3 831 aaPredicted RBP14.04□□□□□ -0.16
LINC00540-202ENST00000616974 NOX5Q96PH1 765 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 HCN2Q9UL51 889 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 OTOGLQ3ZCN5 2332 aa14.04□□□□□ -0.16
LINC00540-202ENST00000616974 SPTBN4Q9H254 2564 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 MFAP3LO75121 409 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 DAB1O75553 588 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ADH5P11766 374 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 COG7P83436 770 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 GFPT1Q06210 699 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 CCINQ13939 588 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ARTNQ5T4W7 220 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ZNF852Q6ZMS4 543 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 BMP8AQ7Z5Y6 402 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 CIR1Q86X95 450 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 PHF13Q86YI8 300 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 NPY6RQ99463 290 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 PACSIN1Q9BY11 444 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 FAM204AQ9H8W3 233 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 STRIP2Q9ULQ0 834 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 SIT1Q9Y3P8 196 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 M0QYT0 321 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms