RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 RNF40O75150 1001 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 TULP3O75386 442 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 LSM8O95777 96 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 CAVIN2O95810 425 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 LMNAP02545 664 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 CYP1A1P04798 512 aaPredicted RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 CORO1AP31146 461 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 SOX5P35711 763 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 CHKAP35790 457 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 GRIA2P42262 883 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 TNFRSF4P43489 277 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 NRLP54845 237 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 GSCP56915 257 aaPredicted RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 YWHAZP63104 245 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 NOMO3P69849 1222 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 MRPS21P82921 87 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 FMO1Q01740 532 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 GOLGA8FQ08AF8 430 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 GOLGA8DPQ0D2H9 430 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 ENPP2Q13822 863 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 NR1I3Q14994 352 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 TAF5Q15542 800 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 FAM133BQ5BKY9 247 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 ADGRF1Q5T601 910 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 OTUD1Q5VV17 481 aaPredicted RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 BTBD8Q5XKL5 378 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 MIB1Q86YT6 1006 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 TERB1Q8NA31 727 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 C1orf131Q8NDD1 294 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 DQX1Q8TE96 717 aaKnown RBP9.17□□□□□ -0.94
SSBP4-208ENST00000600628 BAP1Q92560 729 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 EDEM1Q92611 657 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 PPP1R13BQ96KQ4 1090 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 LMLNQ96KR4 655 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 PNKPQ96T60 521 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 NACA2Q9H009 215 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 POPDC2Q9HBU9 364 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 WDR35Q9P2L0 1181 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 EBF1Q9UH73 591 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 SFMBT1Q9UHJ3 866 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 MYO6Q9UM54 1294 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 TLR6Q9Y2C9 796 aa9.17□□□□□ -0.94
SSBP4-208ENST00000600628 ABCA7Q8IZY2 2146 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 SLC12A8A0AV02 714 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 SYCE3A1L190 88 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 KCNU1A8MYU2 1149 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 PIK3R2O00459 728 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 TRIM24O15164 1050 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 IRAK2O43187 625 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 MSI1O43347 362 aaKnown RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 ADAM23O75077 832 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 ATG13O75143 517 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 KAT7O95251 611 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 ERBB2P04626 1255 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 IRF1P10914 325 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 UNGP13051 313 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 TYRP14679 529 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 HNRNPLP14866 589 aaKnown RBP eCLIP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 HOXD9P28356 352 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 ZNF445P59923 1031 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 POLR2FP61218 127 aaKnown RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 PITX1P78337 314 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CDR2Q01850 454 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 UBXN1Q04323 297 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 DMWDQ09019 674 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 PTP4A2Q12974 167 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 SKOR2Q2VWA4 1001 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 ZSCAN23Q3MJ62 389 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 MPP7Q5T2T1 576 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 NADSYN1Q6IA69 706 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 FAM183BPQ6ZVS7 135 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 IRF2BP2Q7Z5L9 587 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 XYLT1Q86Y38 959 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 ZDHHC17Q8IUH5 632 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 DENND1CQ8IV53 801 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CAMKK1Q8N5S9 505 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 IL17RCQ8NAC3 791 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CCDC26Q8TAB7 109 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 PGAP3Q96FM1 320 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 NAP1L5Q96NT1 182 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 TRIM62Q9BVG3 475 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 SLC2A11Q9BYW1 496 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 MIS12Q9H081 205 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 EPC1Q9H2F5 836 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CBX8Q9HC52 389 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 FAM207AQ9NSI2 230 aaPredicted RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CALCOCO1Q9P1Z2 691 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 RASAL2Q9UJF2 1139 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 TMEM59LQ9UK28 342 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 LSM7Q9UK45 103 aaKnown RBP9.16□□□□□ -0.94
SSBP4-208ENST00000600628 STRIP2Q9ULQ0 834 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CLEC4EQ9ULY5 219 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 MMP17Q9ULZ9 603 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 NAALADL1Q9UQQ1 740 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 CACNA1AO00555 2505 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 SDK1Q7Z5N4 2213 aa9.16□□□□□ -0.94
SSBP4-208ENST00000600628 TNRC6BQ9UPQ9 1833 aaKnown RBP9.15□□□□□ -0.94
SSBP4-208ENST00000600628 TCRBV5S1A1TA0A578 114 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms