RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 C3orf20Q8ND61 904 aa18.96■□□□□ 0.63
LIG1-216ENST00000598938 PANX2Q96RD6 677 aa18.96■□□□□ 0.63
LIG1-216ENST00000598938 METTL5Q9NRN9 209 aaKnown RBP18.96■□□□□ 0.63
LIG1-216ENST00000598938 HBS1LQ9Y450 684 aaKnown RBP18.96■□□□□ 0.63
LIG1-216ENST00000598938 R4GN57 208 aa18.96■□□□□ 0.63
LIG1-216ENST00000598938 IGLV3-25P01717 112 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 SP9P0CG40 484 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 FECHP22830 423 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 NOS2P35228 1153 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 MATKP42679 507 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 NNTQ13423 1086 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 TRIP4Q15650 581 aaPredicted RBP18.95■□□□□ 0.62
LIG1-216ENST00000598938 DCAF6Q58WW2 860 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 CC2D1AQ6P1N0 951 aaPredicted RBP18.95■□□□□ 0.62
LIG1-216ENST00000598938 HTR3DQ70Z44 454 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 PHLDB2Q86SQ0 1253 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 TAC4Q86UU9 113 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 DNAAF5Q86Y56 855 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 C1orf210Q8IVY1 113 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 KIAA2013Q8IYS2 634 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 TTC16Q8NEE8 873 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 OSCP1Q8WVF1 389 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 PLD4Q96BZ4 506 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 SHDQ96IW2 340 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 ZFYVE19Q96K21 471 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 SERPINB11Q96P15 392 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 FAM83CQ9BQN1 747 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 BRD9Q9H8M2 597 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 NHEJ1Q9H9Q4 299 aaPredicted RBP18.95■□□□□ 0.62
LIG1-216ENST00000598938 TRPV5Q9NQA5 729 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 DLL3Q9NYJ7 618 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.95■□□□□ 0.62
LIG1-216ENST00000598938 SH3BP1Q9Y3L3 701 aa18.95■□□□□ 0.62
LIG1-216ENST00000598938 CACNA1IQ9P0X4 2223 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 COL4A2P08572 1712 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 MED19A0JLT2 244 aaPredicted RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 MSI1O43347 362 aaKnown RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 IGLV3-27P01718 113 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 HMBSP08397 361 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 RRM1P23921 792 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 FLT3P36888 993 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 KPNA1P52294 538 aaPredicted RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 RNASE9P60153 205 aaKnown RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 PITX1P78337 314 aaPredicted RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 EIF4EBP2Q13542 120 aaPredicted RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 PDGFRLQ15198 375 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 SLC18A3Q16572 532 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 PPP1R15BQ5SWA1 713 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 TRNP1Q6NT89 227 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 DNAJC24Q6P3W2 148 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 ALKBH5Q6P6C2 394 aaKnown RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 Q6ZNB5 142 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 SPC24Q8NBT2 197 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 PJA1Q8NG27 643 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 DNASE1L2Q92874 299 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 IRF7Q92985 503 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 NT5C3BQ969T7 300 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 TRIM11Q96F44 468 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 DDX23Q9BUQ8 820 aaKnown RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 DUS2Q9NX74 493 aaKnown RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 RRN3Q9NYV6 651 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 LSM7Q9UK45 103 aaKnown RBP18.94■□□□□ 0.62
LIG1-216ENST00000598938 WNT6Q9Y6F9 365 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 NCOR2Q9Y618 2525 aa18.94■□□□□ 0.62
LIG1-216ENST00000598938 SIGLEC16A6NMB1 481 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 IRAK2O43187 625 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 GJB6O95452 261 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 TRUB2O95900 331 aaKnown RBP18.93■□□□□ 0.62
LIG1-216ENST00000598938 KLKB1P03952 638 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 KRT3P12035 628 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 IFNAR2P48551 515 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 STARD6P59095 220 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 PFKPQ01813 784 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 GFPT1Q06210 699 aaPredicted RBP18.93■□□□□ 0.62
LIG1-216ENST00000598938 RING1Q06587 406 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 EML3Q32P44 896 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 ZNF528Q3MIS6 628 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 CCDC122Q5T0U0 273 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 OTUD1Q5VV17 481 aaPredicted RBP18.93■□□□□ 0.62
LIG1-216ENST00000598938 PLEKHA7Q6IQ23 1121 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 JOSD2Q8TAC2 188 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 ADAM32Q8TC27 787 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 SLC39A13Q96H72 371 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 CCDC42Q96M95 316 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 NPY6RQ99463 290 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 HINFPQ9BQA5 517 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 SELENOOQ9BVL4 669 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 DCLK3Q9C098 648 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 DEF6Q9H4E7 631 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 HPS4Q9NQG7 708 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 TBC1D14Q9P2M4 693 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 TLR6Q9Y2C9 796 aa18.93■□□□□ 0.62
LIG1-216ENST00000598938 SLC9A3R1O14745 358 aaPredicted RBP18.92■□□□□ 0.62
LIG1-216ENST00000598938 SCAMP3O14828 347 aaKnown RBP18.92■□□□□ 0.62
LIG1-216ENST00000598938 AKR1B10O60218 316 aa18.92■□□□□ 0.62
LIG1-216ENST00000598938 DCNP07585 359 aaKnown RBP18.92■□□□□ 0.62
LIG1-216ENST00000598938 MYBL1P10243 752 aa18.92■□□□□ 0.62
LIG1-216ENST00000598938 TBX4P57082 545 aa18.92■□□□□ 0.62
LIG1-216ENST00000598938 SLC25A52Q3SY17 297 aa18.92■□□□□ 0.62
LIG1-216ENST00000598938 TRIM68Q6AZZ1 485 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms