RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 IRGQQ8WZA9 623 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 TCEAL3Q969E4 200 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 ERLEC1Q96DZ1 483 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 GABRG3Q99928 467 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 DCLK3Q9C098 648 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 POLMQ9NP87 494 aaPredicted RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 SIX2Q9NPC8 291 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 UBE2TQ9NPD8 197 aaPredicted RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 CD93Q9NPY3 652 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 ABCC13Q9NSE7 274 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 CYTH4Q9UIA0 394 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 SLC27A6Q9Y2P4 619 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 HBS1LQ9Y450 684 aaKnown RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 PCDHGA5Q9Y5G8 931 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 TP53BP1Q12888 1972 aaPredicted RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 ALDH1A2O94788 518 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 FGFR1OPO95684 399 aaKnown RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 LTFP02788 710 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 FYNP06241 537 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 ZNF806P0C7X5 589 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 KRT5P13647 590 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 HOXD9P28356 352 aaPredicted RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 NTSR1P30989 418 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 CHKAP35790 457 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 GPD2P43304 727 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 SGSHP51688 502 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 ELF2Q15723 593 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 MAP7D1Q3KQU3 841 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 USP39Q53GS9 565 aaKnown RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 DENND1BQ6P3S1 775 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 TRMT11Q7Z4G4 463 aaKnown RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 MLKLQ8NB16 471 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 PIWIL1Q96J94 861 aaKnown RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 HSFY1Q96LI6 401 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 MIS12Q9H081 205 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 CACNA2D2Q9NY47 1150 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 CALCOCO1Q9P1Z2 691 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 BCCIPQ9P287 314 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIG1-212ENST00000596549 APEX2Q9UBZ4 518 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 TJP2Q9UDY2 1190 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 MBD1Q9UIS9 605 aaPredicted RBP13.63□□□□□ -0.23
LIG1-212ENST00000596549 STOML2Q9UJZ1 356 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 RAD54BQ9Y620 910 aa13.63□□□□□ -0.23
LIG1-212ENST00000596549 LAMA1P25391 3075 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 SDK1Q7Z5N4 2213 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 BCLAF3A2AJT9 711 aaKnown RBP13.62□□□□□ -0.23
LIG1-212ENST00000596549 SLC30A4O14863 429 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 NDUFV2P19404 249 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 GNA15P30679 374 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 FOXK2Q01167 660 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 CREB5Q02930 508 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 MEA1Q16626 185 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 TMEM215Q68D42 235 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 CLEC17AQ6ZS10 378 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 CHPFQ8IZ52 775 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 RNF139Q8WU17 664 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 RTKNQ9BST9 563 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 NUP62CLQ9H1M0 184 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 SLC6A17Q9H1V8 727 aa13.62□□□□□ -0.23
LIG1-212ENST00000596549 GTPBP10A4D1E9 387 aaKnown RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 WASH3PC4AMC7 463 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 E5RJQ4 531 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 RHOBTB1O94844 696 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 LETM1O95202 739 aaPredicted RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 LATS1O95835 1130 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 PNMA6AP0CW24 399 aaPredicted RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 PON1P27169 355 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 ANP32AP39687 249 aaKnown RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 IL12RB1P42701 662 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 ENPP2Q13822 863 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 MAN2A1Q16706 1144 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 ARHGAP44Q17R89 818 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 AASDHQ4L235 1098 aaPredicted RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 FAM133BQ5BKY9 247 aaKnown RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 MIIPQ5JXC2 388 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 DPY19L2P1Q6NXN4 242 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 NUDT18Q6ZVK8 323 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 ENOSF1Q7L5Y1 443 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 ANKS1BQ7Z6G8 1248 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 C11orf74Q86VG3 221 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 CREBRFQ8IUR6 639 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 C12orf50Q8NA57 414 aaPredicted RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 WFDC5Q8TCV5 224 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 DQX1Q8TE96 717 aaKnown RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 IPO4Q8TEX9 1081 aaKnown RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 ZNF606Q8WXB4 792 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 SHC3Q92529 594 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 SPACA7Q96KW9 195 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 PRICKLE1Q96MT3 831 aaPredicted RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 SLC4A5Q9BY07 1137 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 THAP9Q9H5L6 903 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 VPS45Q9NRW7 570 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 LMBRD1Q9NUN5 540 aa13.61□□□□□ -0.23
LIG1-212ENST00000596549 ATXN2Q99700 1313 aaKnown RBP13.61□□□□□ -0.23
LIG1-212ENST00000596549 DCDC2BA2VCK2 349 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 PATE3B3GLJ2 98 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 PAPSS1O43252 624 aaPredicted RBP13.6□□□□□ -0.23
LIG1-212ENST00000596549 THAP12O43422 761 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 TSPAN3O60637 253 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 FBXO21O94952 628 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms