RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SKOR2Q2VWA4 1001 aaPredicted RBP20.97■□□□□ 0.95
SS18-218ENST00000581021 FBXO43Q4G163 708 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 EMC10Q5UCC4 262 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 TOGARAM2Q6ZUX3 1019 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 TMEM35BQ8NCS4 154 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 SLC39A13Q96H72 371 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 SPAG5Q96R06 1193 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 PCDHB18PQ96TA0 734 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 ADAM33Q9BZ11 813 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 POPDC2Q9HBU9 364 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 DNAJC17Q9NVM6 304 aaKnown RBP20.97■□□□□ 0.95
SS18-218ENST00000581021 STOML2Q9UJZ1 356 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 CLEC4EQ9ULY5 219 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 ZNF510Q9Y2H8 683 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 DAAM1Q9Y4D1 1078 aa20.97■□□□□ 0.95
SS18-218ENST00000581021 PROB1E7EW31 1015 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 LSM8O95777 96 aaKnown RBP20.96■□□□□ 0.95
SS18-218ENST00000581021 CISD3P0C7P0 127 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 STAT1P42224 750 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 GRIA2P42262 883 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 SGSHP51688 502 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 TBX4P57082 545 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 CDR2Q01850 454 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 EIF4EBP2Q13542 120 aaPredicted RBP20.96■□□□□ 0.95
SS18-218ENST00000581021 C2orf27AQ580R0 203 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 OTUD1Q5VV17 481 aaPredicted RBP20.96■□□□□ 0.95
SS18-218ENST00000581021 NAA35Q5VZE5 725 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 NADSYN1Q6IA69 706 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 OR6B2Q6IFH4 312 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 DEFB106AQ8N104 65 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 CPXM2Q8N436 756 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 TERB1Q8NA31 727 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 ZBTB44Q8NCP5 570 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 OLIG1Q8TAK6 271 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 CPA5Q8WXQ8 436 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 BAP1Q92560 729 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 MYEOVQ96EZ4 313 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 NOX5Q96PH1 765 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 ASNSD1Q9NWL6 643 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 WDR35Q9P2L0 1181 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 DEC1Q9P2X7 70 aa20.96■□□□□ 0.95
SS18-218ENST00000581021 GOLGA6L7A0A1B0GV03 622 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 CYP1A1P04798 512 aaPredicted RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 APODP05090 189 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 SLC6A4P31645 630 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 KIR2DL1P43626 348 aaPredicted RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 GABRB2P47870 512 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 HARS2P49590 506 aaKnown RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 RING1Q06587 406 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 NFKBIBQ15653 356 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 FAM133BQ5BKY9 247 aaKnown RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 SLC26A9Q7LBE3 791 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 XYLT1Q86Y38 959 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 IPO4Q8TEX9 1081 aaKnown RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 EXOC4Q96A65 974 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 PDCL3Q9H2J4 239 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 CALCOCO1Q9P1Z2 691 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 XPO7Q9UIA9 1087 aaKnown RBP20.95■□□□□ 0.94
SS18-218ENST00000581021 FBXO10Q9UK96 956 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 CEP83Q9Y592 693 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 WDR87Q6ZQQ6 2873 aa20.95■□□□□ 0.94
SS18-218ENST00000581021 PRRT4C9JH25 899 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 IRAK2O43187 625 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 TSPAN3O60637 253 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 HSF2BPO75031 334 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 TRUB2O95900 331 aaKnown RBP20.94■□□□□ 0.94
SS18-218ENST00000581021 GLI1P08151 1106 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 HNRNPLP14866 589 aaKnown RBP eCLIP20.94■□□□□ 0.941e-9■■■■■ 30.1
SS18-218ENST00000581021 CHKAP35790 457 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 SLC6A3Q01959 620 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 ARID5AQ03989 594 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 NNTQ13423 1086 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 NR1I3Q14994 352 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 DCAF6Q58WW2 860 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 E4F1Q66K89 784 aaPredicted RBP20.94■□□□□ 0.94
SS18-218ENST00000581021 GRAMD4Q6IC98 578 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 ASCL5Q7RTU5 278 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 ZNF677Q86XU0 584 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 SERPINB11Q96P15 392 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 TTYH3Q9C0H2 523 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 SYNCQ9H7C4 482 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 ZSCAN32Q9NX65 697 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 TLR6Q9Y2C9 796 aa20.94■□□□□ 0.94
SS18-218ENST00000581021 A0A1W2PQC6 194 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 CAPN9O14815 690 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 LILRB5O75023 590 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 DAB1O75553 588 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 LATS1O95835 1130 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 TFE3P19532 575 aaPredicted RBP20.93■□□□□ 0.94
SS18-218ENST00000581021 HOXD9P28356 352 aaPredicted RBP20.93■□□□□ 0.94
SS18-218ENST00000581021 PXNP49023 591 aaPredicted RBP20.93■□□□□ 0.94
SS18-218ENST00000581021 FNTBP49356 437 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 MRE11P49959 708 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 FANCCQ00597 558 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 ZC3H12AQ5D1E8 599 aaKnown RBP20.93■□□□□ 0.94
SS18-218ENST00000581021 EFHC1Q5JVL4 640 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 C10orf76Q5T2E6 689 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 ADGRF1Q5T601 910 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 NUGGCQ68CJ6 796 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms