RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PRRX2Q99811 253 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ACAT2Q9BWD1 397 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 BRD8Q9H0E9 1235 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 PCED1AQ9H1Q7 454 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 HSD3B7Q9H2F3 369 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TP63Q9H3D4 680 aaPredicted RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 POFUT1Q9H488 388 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 INCENPQ9NQS7 918 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 CATSPERZQ9NTU4 200 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 PNPOQ9NVS9 261 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 NINJ2Q9NZG7 142 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 EXTL2Q9UBQ6 330 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 UBA2Q9UBT2 640 aaPredicted RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 MORF4L1Q9UBU8 362 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 AFF4Q9UHB7 1163 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 PRSS50Q9UI38 385 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ZNF215Q9UL58 517 aaPredicted RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 WASF3Q9UPY6 502 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 PCDHA3Q9Y5H8 950 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 CDY2AQ9Y6F7 541 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 FBN3Q75N90 2809 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 WDR87Q6ZQQ6 2873 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TECTAO75443 2155 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 A0A0U1RQK1 487 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 A0A1W2PQM1 296 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ZNF320A2RRD8 509 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 WIPF3A6NGB9 483 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 URADA6NGE7 173 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 C2orf81A6NN90 581 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 LACTBL1A8MY62 500 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 H0YAE9 185 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 H3BUI4 141 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 IGF2BP3O00425 579 aaKnown RBP eCLIP3.21□□□□□ -1.9
VPS35-209ENST00000568642 DNM1LO00429 736 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 PES1O00541 588 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 NDC80O14777 642 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 SLC27A2O14975 620 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ZBTB43O43298 467 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 HNRNPRO43390 633 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 SIGLEC6O43699 453 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TLR2O60603 784 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 KERAO60938 352 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 RTN2O75298 545 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 PRAMEF1O95521 474 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ABHD16AO95870 558 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 SNRPA1P09661 255 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 SKILP12757 684 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 LAG3P18627 525 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 KRT15P19012 456 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 EIF2AK2P19525 551 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 RXRAP19793 462 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 PSMA4P25789 261 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 PSMB10P40306 273 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 IL15P40933 162 aaPredicted RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 BCL6P41182 706 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 AMPHP49418 695 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 CCNA1P78396 465 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ADCY2Q08462 1091 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 MESP2Q0VG99 397 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 MGAT2Q10469 447 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 AIMP1Q12904 312 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 NMIQ13287 307 aaPredicted RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 FHL3Q13643 280 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ARHGEF6Q15052 776 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TRADDQ15628 312 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TMEM266Q2M3C6 531 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 RABL6Q3YEC7 729 aaPredicted RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 KHDC1Q4VXA5 237 aaKnown RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 CEP55Q53EZ4 464 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ZNF628Q5EBL2 1059 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 BMP2KLQ5H9B9 411 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 PRAMEF14Q5SWL7 426 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TTC22Q5TAA0 569 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ADALQ6DHV7 355 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ELMSAN1Q6PJG2 1045 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 CRTC3Q6UUV7 619 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 DLK2Q6UY11 383 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 GAREM2Q75VX8 874 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 BEND5Q7L4P6 421 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TMC6Q7Z403 805 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TTC7BQ86TV6 843 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 MON1AQ86VX9 555 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 CNTN4Q8IWV2 1026 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ZZZ3Q8IYH5 903 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 SFRP1Q8N474 314 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ZBTB8BQ8NAP8 495 aaPredicted RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 DTWD2Q8NBA8 298 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 GALNT11Q8NCW6 608 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 OR6Y1Q8NGX8 325 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 IFI44Q8TCB0 444 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 XAGE3Q8WTP9 111 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 RNF141Q8WVD5 230 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 KBTBD7Q8WVZ9 684 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 ATOH1Q92858 354 aaPredicted RBP3.21□□□□□ -1.9
VPS35-209ENST00000568642 MR1Q95460 341 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 IQCDQ96DY2 449 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 MYRFLQ96LU7 910 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 TIGD1Q96MW7 591 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 NOX5Q96PH1 765 aa3.21□□□□□ -1.9
VPS35-209ENST00000568642 KCNJ15Q99712 375 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms