RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PLD4Q96BZ4 506 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 PIWIL1Q96J94 861 aaKnown RBP16.83■□□□□ 0.28
CLN3-229ENST00000567963 SLC6A17Q9H1V8 727 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 LRRC4Q9HBW1 653 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 METTL14Q9HCE5 456 aaKnown RBP16.83■□□□□ 0.28
CLN3-229ENST00000567963 OLA1Q9NTK5 396 aaKnown RBP16.83■□□□□ 0.28
CLN3-229ENST00000567963 KIAA1257Q9ULG3 409 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 CYP8B1Q9UNU6 501 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 STON1Q9Y6Q2 735 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 CHD8Q9HCK8 2581 aa16.83■□□□□ 0.28
CLN3-229ENST00000567963 NPC1O15118 1278 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 CYBBP04839 570 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 CD19P15391 556 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 CSRP1P21291 193 aaKnown RBP16.82■□□□□ 0.28
CLN3-229ENST00000567963 FMO5P49326 533 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 ENPP2Q13822 863 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 BECN1Q14457 450 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 TRIP4Q15650 581 aaPredicted RBP16.82■□□□□ 0.28
CLN3-229ENST00000567963 DUOXA1Q1HG43 343 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 ISM2Q6H9L7 571 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 SLC41A1Q8IVJ1 513 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 FAM217AQ8IXS0 508 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 ELOA2Q8IYF1 753 aaPredicted RBP16.82■□□□□ 0.28
CLN3-229ENST00000567963 UBA3Q8TBC4 463 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 KCTD13Q8WZ19 329 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 DHTKD1Q96HY7 919 aaPredicted RBP16.82■□□□□ 0.28
CLN3-229ENST00000567963 IPO9Q96P70 1041 aaKnown RBP16.82■□□□□ 0.28
CLN3-229ENST00000567963 THAP10Q9P2Z0 257 aaPredicted RBP16.82■□□□□ 0.28
CLN3-229ENST00000567963 CLEC4EQ9ULY5 219 aa16.82■□□□□ 0.28
CLN3-229ENST00000567963 CACNA1BQ00975 2339 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 O00370 1275 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 PSMA7O14818 248 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 PMM2O15305 246 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 CFIP05156 583 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 CD44P16070 742 aaKnown RBP16.81■□□□□ 0.28
CLN3-229ENST00000567963 ZNF132P52740 706 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 ADIGQ0VDE8 80 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 STIM1Q13586 685 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 ST3GAL2Q16842 350 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 PKDCCQ504Y2 493 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 BSPRYQ5W0U4 402 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 FMNL3Q8IVF7 1028 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 DDI1Q8WTU0 396 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 UCMAQ8WVF2 138 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 ZNF419Q96HQ0 510 aaPredicted RBP16.81■□□□□ 0.28
CLN3-229ENST00000567963 CEP63Q96MT8 703 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 SLC2A11Q9BYW1 496 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 CD93Q9NPY3 652 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 SFMBT1Q9UHJ3 866 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 SLC6A14Q9UN76 642 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 ASCC3Q8N3C0 2202 aaKnown RBP16.81■□□□□ 0.28
CLN3-229ENST00000567963 ADAMTS9Q9P2N4 1935 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 ASPMQ8IZT6 3477 aa16.81■□□□□ 0.28
CLN3-229ENST00000567963 ZFHX4Q86UP3 3567 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 YJEFN3A6XGL0 299 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 E7ENQ6 273 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 KRT37O76014 449 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 SERPINF2P08697 491 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 SETSIPP0DME0 302 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 IL12RB1P42701 662 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 MAPK8P45983 427 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 HARS2P49590 506 aaKnown RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 STARD3Q14849 445 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 FUT11Q495W5 492 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 TMEM270Q6UE05 265 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 LCLAT1Q6UWP7 414 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 ANKS1BQ7Z6G8 1248 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 RABEPKQ7Z6M1 372 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 METTL3Q86U44 580 aaKnown RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 SCML4Q8N228 414 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 TRIML1Q8N9V2 468 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 RNF139Q8WU17 664 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 EDEM1Q92611 657 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 MKRN2Q9H000 416 aaKnown RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 CAPN10Q9HC96 672 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 CNGB3Q9NQW8 809 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 ABCC13Q9NSE7 274 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 ELOVL2Q9NXB9 296 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 HBS1LQ9Y450 684 aaKnown RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 MAP1BP46821 2468 aaKnown RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 FRYQ5TBA9 3013 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 NDUFS2O75306 463 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 PAEPP09466 180 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 PPP1R2P41236 205 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 GFPT1Q06210 699 aaPredicted RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 ZNF252P-AS1Q0IIN9 211 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 E2F5Q15329 346 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 MPPE1Q53F39 396 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 TMEM215Q68D42 235 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 KIAA1324Q6UXG2 1013 aaKnown RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 SIX6OS1Q8N1H7 587 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 RBBP8NLQ8NC74 664 aaPredicted RBP16.8■□□□□ 0.28
CLN3-229ENST00000567963 LMO3Q8TAP4 145 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 SLC35F5Q8WV83 523 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 TFAP2BQ92481 460 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 HSPA12BQ96MM6 686 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 NT5C1BQ96P26 610 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 PRDM16Q9HAZ2 1276 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 FSCN3Q9NQT6 498 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 STOML2Q9UJZ1 356 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms