RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 HSDL1Q3SXM5 330 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 N4BP2L1Q5TBK1 243 aaPredicted RBP13.65□□□□□ -0.23
CLN3-210ENST00000563874 FAM160B1Q5W0V3 765 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 SCUBE3Q8IX30 993 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 THAP1Q9NVV9 213 aa13.65□□□□□ -0.23
CLN3-210ENST00000563874 CPSF2Q9P2I0 782 aaKnown RBP13.65□□□□□ -0.23
CLN3-210ENST00000563874 WDR27A2RRH5 827 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 PROCP04070 461 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 F7P08709 466 aaPredicted RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 MTA1Q13330 715 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 ACAP1Q15027 740 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 RNF111Q6ZNA4 994 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 WDR75Q8IWA0 830 aaKnown RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 PGLYRP2Q96PD5 576 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 B3GNT5Q9BYG0 378 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 PTPRHQ9HD43 1115 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 PNPOQ9NVS9 261 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 BTBD7Q9P203 1132 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 FAM159BA6NKW6 160 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 GSRP00390 522 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 HMGB2P26583 209 aaKnown RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 WASHC5Q12768 1159 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 SLC10A2Q12908 348 aaPredicted RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 CATSPERGQ6ZRH7 1159 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 TSHZ1Q6ZSZ6 1077 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 RASSF3Q86WH2 238 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 PIWIL2Q8TC59 973 aaKnown RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 SEPT1Q8WYJ6 367 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 TRAPPC9Q96Q05 1148 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 MIS12Q9H081 205 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 AS3MTQ9HBK9 375 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 DDX43Q9NXZ2 648 aaKnown RBP13.64□□□□□ -0.23
CLN3-210ENST00000563874 PDP2Q9P2J9 529 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 MFHAS1Q9Y4C4 1052 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 PSME4Q14997 1843 aa13.64□□□□□ -0.23
CLN3-210ENST00000563874 ZBTB42B2RXF5 422 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 ACKR2O00590 384 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 TPP1O14773 563 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 ETS2P15036 469 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 SLC1A6P48664 564 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 ASPHQ12797 758 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 TUBB3Q13509 450 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 MXD4Q14582 209 aaPredicted RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 PPM1JQ5JR12 505 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 TEDDM1Q5T9Z0 273 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 ISLR2Q6UXK2 745 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 JDP2Q8WYK2 163 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 CEP41Q9BYV8 373 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 FAM49BQ9NUQ9 324 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 EMCNQ9ULC0 261 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 APOBEC2Q9Y235 224 aaKnown RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 RPS6KL1Q9Y6S9 549 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 MYO18AQ92614 2054 aaKnown RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 BCLAF3A2AJT9 711 aaKnown RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 BUD23O43709 281 aaKnown RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 ALDOAP04075 364 aaKnown RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 STAG3L1P0CL83 205 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 NCF2P19878 526 aaPredicted RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 PROZP22891 400 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 CRABP2P29373 138 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 GSTT1P30711 240 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 GSTA3Q16772 222 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 EFHC1Q5JVL4 640 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 TCHHL1Q5QJ38 904 aaPredicted RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 MBLAC2Q68D91 279 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 PMF1Q6P1K2 205 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 MAVSQ7Z434 540 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 RTP4Q96DX8 246 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 HPDLQ96IR7 371 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 NR1H4Q96RI1 486 aaPredicted RBP13.63□□□□□ -0.23
CLN3-210ENST00000563874 PACSIN3Q9UKS6 424 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 PSAT1Q9Y617 370 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 SIP14410 1827 aa13.63□□□□□ -0.23
CLN3-210ENST00000563874 SIN3BO75182 1162 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 ARIH2O95376 493 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 FGF3P11487 239 aaPredicted RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 CYP2F1P24903 491 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 ARRB2P32121 409 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 SESN2P58004 480 aaPredicted RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 IGBP1P78318 339 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 SFT2D3Q587I9 215 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 CCDC97Q96F63 343 aaPredicted RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 CLMNQ96JQ2 1002 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 R3HDMLQ9H3Y0 253 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 DHX35Q9H5Z1 703 aaKnown RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 S100A14Q9HCY8 104 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 ADAMTS6Q9UKP5 1117 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 BIRC5O15392 142 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 VDRP11473 427 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 AOC1P19801 751 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 TGM2P21980 687 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 PEX2P28328 305 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 SDC4P31431 198 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 PDE1CQ14123 709 aaPredicted RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 GOLGA7BQ2TAP0 167 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 BOLA3Q53S33 107 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 SLC9A4Q6AI14 798 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 KCNT2Q6UVM3 1135 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 CES3Q6UWW8 571 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms