RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 METTL12A8MUP2 240 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 NDUFS2O75306 463 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 RHOBTB3O94955 611 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 HOXB3P14651 431 aaPredicted RBP17.25■□□□□ 0.35
CLN3-208ENST00000561505 CMA1P23946 247 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 OXTRP30559 389 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 PIK3CAP42336 1068 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 COPAP53621 1224 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 BNC1Q01954 994 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 RING1Q06587 406 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 PDE4CQ08493 712 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 GRIK2Q13002 908 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 EIF4HQ15056 248 aaKnown RBP17.25■□□□□ 0.35
CLN3-208ENST00000561505 PM20D1Q6GTS8 502 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 TTC39CQ8N584 583 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 TOE1Q96GM8 510 aaKnown RBP17.25■□□□□ 0.35
CLN3-208ENST00000561505 CAMK1GQ96NX5 476 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 ELOVL2Q9NXB9 296 aa17.25■□□□□ 0.35
CLN3-208ENST00000561505 AGO1Q9UL18 857 aaKnown RBP17.25■□□□□ 0.35
CLN3-208ENST00000561505 MYH10P35580 1976 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 CALUO43852 315 aaPredicted RBP17.24■□□□□ 0.35
CLN3-208ENST00000561505 CENPBP07199 599 aaPredicted RBP17.24■□□□□ 0.35
CLN3-208ENST00000561505 RALAP11233 206 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 MAOBP27338 520 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 GTF2H1P32780 548 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 TPMTP51580 245 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 STARD3Q14849 445 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 ZCWPW2Q504Y3 356 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 TMEM215Q68D42 235 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 ARHGAP17Q68EM7 881 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 CCNI2Q6ZMN8 369 aaPredicted RBP17.24■□□□□ 0.35
CLN3-208ENST00000561505 KIAA0907Q7Z7F0 614 aaPredicted RBP17.24■□□□□ 0.35
CLN3-208ENST00000561505 NAXDQ8IW45 347 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 RGL4Q8IZJ4 473 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 IMPG2Q9BZV3 1241 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 STOML2Q9UJZ1 356 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 PCOLCE2Q9UKZ9 415 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 CLEC4EQ9ULY5 219 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 CKAP5Q14008 2032 aa17.24■□□□□ 0.35
CLN3-208ENST00000561505 TIMM44O43615 452 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 KIF20AO95235 890 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 FTH1P19P0C7X4 201 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 NCAM1P13591 858 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 GCLMP48507 274 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 ZNF234Q14588 700 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 TRIP4Q15650 581 aaPredicted RBP17.23■□□□□ 0.35
CLN3-208ENST00000561505 CEP135Q66GS9 1140 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 KIAA1324Q6UXG2 1013 aaKnown RBP17.23■□□□□ 0.35
CLN3-208ENST00000561505 BHLHA9Q7RTU4 235 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 TMPRSS6Q8IU80 811 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 ARHGAP18Q8N392 663 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 GUF1Q8N442 669 aaKnown RBP17.23■□□□□ 0.35
CLN3-208ENST00000561505 SLC4A11Q8NBS3 891 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 UCMAQ8WVF2 138 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 GPR174Q9BXC1 333 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 TMEM8AQ9HCN3 771 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 OSGEPQ9NPF4 335 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 PCDHGB2Q9Y5G2 931 aa17.23■□□□□ 0.35
CLN3-208ENST00000561505 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.22■□□□□ 0.35
CLN3-208ENST00000561505 PFKFB1P16118 471 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 NR2F2P24468 414 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 CORO1AP31146 461 aaKnown RBP17.22■□□□□ 0.35
CLN3-208ENST00000561505 PSMC2P35998 433 aaKnown RBP17.22■□□□□ 0.35
CLN3-208ENST00000561505 RAD23BP54727 409 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 DNM1Q05193 864 aaKnown RBP17.22■□□□□ 0.35
CLN3-208ENST00000561505 CAMK2GQ13555 558 aaPredicted RBP17.22■□□□□ 0.35
CLN3-208ENST00000561505 ANKS1BQ7Z6G8 1248 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 SLCO6A1Q86UG4 719 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 JAKMIP2Q96AA8 810 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 SIPA1Q96FS4 1042 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 NUP58Q9BVL2 599 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 DNAI2Q9GZS0 605 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 TMEM245Q9H330 911 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 DKK4Q9UBT3 224 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 LHX6Q9UPM6 363 aa17.22■□□□□ 0.35
CLN3-208ENST00000561505 PLXNB3Q9ULL4 1909 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 FASNP49327 2511 aaKnown RBP17.21■□□□□ 0.35
CLN3-208ENST00000561505 TRIM49P0CI25 452 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 TRIM49CP0CI26 452 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 EFEMP1Q12805 493 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 DPYDQ12882 1025 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 PKP1Q13835 747 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 KRT39Q6A163 491 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 PIGZQ86VD9 579 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 FAM186BQ8IYM0 893 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.21■□□□□ 0.35
CLN3-208ENST00000561505 ANKRD52Q8NB46 1076 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 SEMA4DQ92854 862 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 BHMTQ93088 406 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 PLD4Q96BZ4 506 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 TMEM176AQ96HP8 235 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 TOR4AQ9NXH8 423 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 MARCH2Q9P0N8 246 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 GPSM3Q9Y4H4 160 aa17.21■□□□□ 0.35
CLN3-208ENST00000561505 A0A1B0GVL5 298 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 BCAT2O15382 392 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 LATS1O95835 1130 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 CD58P19256 250 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 PRKCHP24723 683 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 SCAPQ12770 1279 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms