RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 IL21RQ9HBE5 538 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 GDAP2Q9NXN4 497 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 GCNT4Q9P109 453 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 GTF3C4Q9UKN8 822 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 MAGED2Q9UNF1 606 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-230ENST00000557427 SIK3Q9Y2K2 1263 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 PCDHB5Q9Y5E4 795 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 PTPRQQ9UMZ3 2332 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 IGHV1OR15-9A0A0B4J2B8 117 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 PYCARD-AS1I3L0S3 204 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 CETN3O15182 167 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 CLSTN1O94985 981 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 NR3C1P04150 777 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 GABRG2P18507 467 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 TRIM21P19474 475 aaKnown RBP13.19□□□□□ -0.3
SHMT2-230ENST00000557427 LMO2P25791 158 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 LHX1P48742 406 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 CDK17Q00537 523 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 MYL7Q01449 175 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 NR1H3Q13133 447 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 BYSLQ13895 437 aaKnown RBP13.19□□□□□ -0.3
SHMT2-230ENST00000557427 MEA1Q16626 185 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 PLEKHG6Q3KR16 790 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 CCDC40Q4G0X9 1142 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 SYT10Q6XYQ8 523 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 RABEPKQ7Z6M1 372 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 C12orf40Q86WS4 652 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 TRIM59Q8IWR1 403 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 ADGRF2Q8IZF7 708 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 TOP6BLQ8N6T0 577 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 ARL14EPQ8N8R7 260 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-230ENST00000557427 ZNF397Q8NF99 534 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-230ENST00000557427 PLEKHO2Q8TD55 490 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 SH3RF2Q8TEC5 729 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 ELMO3Q96BJ8 720 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 HNRNPABQ99729 332 aaKnown RBP13.19□□□□□ -0.3
SHMT2-230ENST00000557427 ACBD6Q9BR61 282 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 DMAC2Q9NW81 257 aa13.19□□□□□ -0.3
SHMT2-230ENST00000557427 MGAQ8IWI9 3026 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 ATMQ13315 3056 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 SPTA1P02549 2419 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 MYO18AQ92614 2054 aaKnown RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 A0A0A0MRY4 1105 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 C2orf78A6NCI8 922 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 ATP2C2O75185 946 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 CYP2F1P24903 491 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 RPL13P26373 211 aaKnown RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 HNRNPH3P31942 346 aaKnown RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 GNL1P36915 607 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 MYL6P60660 151 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 SMARCB1Q12824 385 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 GRIK2Q13002 908 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 ADAM9Q13443 819 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 BIRC3Q13489 604 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 DDR2Q16832 855 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 CCDC142Q17RM4 750 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 WDR72Q3MJ13 1102 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 EOGTQ5NDL2 527 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 SLC36A4Q6YBV0 504 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 SPPL2BQ8TCT7 592 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 C2orf15Q8WU43 125 aaKnown RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 EEF2KMTQ96G04 330 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 PCMTD1Q96MG8 357 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 HSPA12BQ96MM6 686 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 DESI2Q9BSY9 194 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 L2HGDHQ9H9P8 463 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 TRPC7Q9HCX4 862 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 CD93Q9NPY3 652 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 ZNHIT6Q9NWK9 470 aaKnown RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 CALCOCO1Q9P1Z2 691 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 NXF1Q9UBU9 619 aaKnown RBP13.18□□□□□ -0.3
SHMT2-230ENST00000557427 HCN2Q9UL51 889 aa13.18□□□□□ -0.3
SHMT2-230ENST00000557427 MUC22E2RYF6 1773 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 LRRIQ3A6PVS8 624 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 GABRDO14764 452 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 SLC16A3O15427 465 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 TLX3O43711 291 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 KAT7O95251 611 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 NFATC1O95644 943 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 CYP17A1P05093 508 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 USP17L7P0C7H9 530 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 MAOBP27338 520 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 EIF2S3P41091 472 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 PSMC1P62191 440 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 DLG4P78352 724 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 CFHR1Q03591 330 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 NFE2Q16621 373 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 HSF5Q4G112 596 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 INTS6LQ5JSJ4 861 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 DPH6Q7L8W6 267 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 SPATA2LQ8IUW3 424 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 SLC9A9Q8IVB4 645 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 ADGRG2Q8IZP9 1017 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 PDCD7Q8N8D1 485 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 OR6B3Q8NGW1 331 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 PARD3BQ8TEW8 1205 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 SETD7Q8WTS6 366 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 KBTBD7Q8WVZ9 684 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 ZNF419Q96HQ0 510 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 MRPL45Q9BRJ2 306 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms