RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RTN4RL1Q86UN2 441 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 PLD5Q8N7P1 536 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SH3GL3Q99963 347 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 FAM118BQ9BPY3 351 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 RTP3Q9BQQ7 232 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 PAAF1Q9BRP4 392 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 COLEC11Q9BWP8 271 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 ULBP1Q9BZM6 244 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 CDC42EP4Q9H3Q1 356 aaKnown RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SEMA4AQ9H3S1 761 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 NRDE2Q9H7Z3 1164 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 PPANQ9NQ55 473 aaKnown RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SPATS2LQ9NUQ6 558 aaKnown RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 TBC1D13Q9NVG8 400 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 CTNNAL1Q9UBT7 734 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 LRFN2Q9ULH4 789 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 FZD10Q9ULW2 581 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 CARNS1A5YM72 827 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 H7C0C1 242 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 M0QYT0 321 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 WFS1O76024 890 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 BEST1O76090 585 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 AGTP01019 485 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 TSHRP16473 764 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 DRD4P21917 467 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 CYP2C18P33260 490 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 SKIV2L2P42285 1042 aaKnown RBP13.1□□□□□ -0.31
SHMT2-229ENST00000557348 ATP5OP48047 213 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 HCAR3P49019 387 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 STAT4Q14765 748 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 PPP6R3Q5H9R7 873 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-229ENST00000557348 RNASEH2BQ5TBB1 312 aaKnown RBP13.1□□□□□ -0.31
SHMT2-229ENST00000557348 MFSD5Q6N075 450 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 VSTM1Q6UX27 236 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 CD300LGQ6UXG3 332 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 RIBC1Q8N443 379 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-229ENST00000557348 CCDC63Q8NA47 563 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 LINC01599Q8WXQ3 324 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 SERPINB12Q96P63 405 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 XPO6Q96QU8 1125 aaKnown RBP13.1□□□□□ -0.31
SHMT2-229ENST00000557348 RBM15Q96T37 977 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHMT2-229ENST00000557348 TMEM175Q9BSA9 504 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 UNC93B1Q9H1C4 597 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 EPB41L4BQ9H329 900 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 CENPHQ9H3R5 247 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 NOD2Q9HC29 1040 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 SAMD15Q9P1V8 674 aa13.1□□□□□ -0.31
SHMT2-229ENST00000557348 OR6C75A6NL08 312 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 DCDC2CA8MYV0 355 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 HHLA1C9JL84 531 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 RASGRF2O14827 1237 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 PECAM1P16284 738 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 IBSPP21815 317 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 IL4RP24394 825 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 HTR7P34969 479 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ARL4CP56559 192 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 MMRN1Q13201 1228 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ZC3H12AQ5D1E8 599 aaKnown RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 TTC19Q6DKK2 380 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 TAOK1Q7L7X3 1001 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ANKRD33Q7Z3H0 272 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ARHGAP18Q8N392 663 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 PQLC3Q8N755 202 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ZMIZ2Q8NF64 920 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 PCDH19Q8TAB3 1148 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 TOX2Q96NM4 488 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 CSPG4P5Q96PW8 444 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ADAM7Q9H2U9 754 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 AAASQ9NRG9 546 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 CACNG4Q9UBN1 327 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 CORO1CQ9ULV4 474 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 C15orf41Q9Y2V0 281 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 FARP1Q9Y4F1 1045 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 USP3Q9Y6I4 520 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 TDRD15B5MCY1 1934 aaKnown RBP13.09□□□□□ -0.31
SHMT2-229ENST00000557348 TSC2P49815 1807 aa13.09□□□□□ -0.31
SHMT2-229ENST00000557348 ENPP3O14638 875 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 CHADO15335 359 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 NCAM2O15394 837 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 RGS16O15492 202 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-229ENST00000557348 TADA2AO75478 443 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 STK10O94804 968 aaKnown RBP13.08□□□□□ -0.31
SHMT2-229ENST00000557348 ATP2A2P16615 1042 aaKnown RBP13.08□□□□□ -0.31
SHMT2-229ENST00000557348 PHBP35232 272 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 OR1G1P47890 313 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 CBLBQ13191 982 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 PAN2Q504Q3 1202 aaKnown RBP13.08□□□□□ -0.31
SHMT2-229ENST00000557348 C1orf53Q5VUE5 145 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 ZNF280DQ6N043 979 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 NPAS4Q8IUM7 802 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 PDIK1LQ8N165 341 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 DBF4BQ8NFT6 615 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 SH3TC2Q8TF17 1288 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 BRD8Q9H0E9 1235 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 ZCWPW1Q9H0M4 648 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 ABCC13Q9NSE7 274 aa13.08□□□□□ -0.31
SHMT2-229ENST00000557348 RPL26L1Q9UNX3 145 aaKnown RBP13.08□□□□□ -0.31
SHMT2-229ENST00000557348 I3L4J1 428 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 NBNO60934 754 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 DDHD2O94830 711 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms