RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 IGLV3-27P01718 113 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 CALB1P05937 261 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 DCNP07585 359 aaKnown RBP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 TPM1P09493 284 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 SKILP12757 684 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 NOS2P35228 1153 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 CHKAP35790 457 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 RNASE9P60153 205 aaKnown RBP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 GRSF1Q12849 480 aaKnown RBP eCLIP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 LRRC32Q14392 662 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 ANO4Q32M45 955 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 TDRD12Q587J7 1177 aaKnown RBP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 ZNF571Q7Z3V5 609 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 TMEM25Q86YD3 366 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 UNC45BQ8IWX7 931 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 CD101Q93033 1021 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 P2RY13Q9BPV8 354 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 RRN3Q9NYV6 651 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 WDR35Q9P2L0 1181 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 STAP1Q9ULZ2 295 aa14.15□□□□□ -0.14
SHMT2-228ENST00000557302 BZW2Q9Y6E2 419 aaKnown RBP14.15□□□□□ -0.14
SHMT2-228ENST00000557302 IRAK2O43187 625 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 HOXC11O43248 304 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-228ENST00000557302 IGLV3-25P01717 112 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 APOEP02649 317 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 SERPING1P05155 500 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 GBP1P32455 592 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 MATKP42679 507 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 MAGEA9P43362 315 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 SLC11A2P49281 568 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 GALK1P51570 392 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 PITX1P78337 314 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-228ENST00000557302 PTP4A2Q12974 167 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 GAB4Q2WGN9 574 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 TMEM196Q5HYL7 178 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 HGSNATQ68CP4 663 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 ACAD10Q6JQN1 1059 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 TPGS1Q6ZTW0 290 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 MON1BQ7L1V2 547 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 VPS36Q86VN1 386 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 ZNF687Q8N1G0 1237 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 CPXM2Q8N436 756 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 OLIG1Q8TAK6 271 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 CLDN23Q96B33 292 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 FAM122AQ96E09 287 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 SLC39A13Q96H72 371 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 FCRL2Q96LA5 508 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-228ENST00000557302 BBS2Q9BXC9 721 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 LMAN1LQ9HAT1 526 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 METTL5Q9NRN9 209 aaKnown RBP14.14□□□□□ -0.15
SHMT2-228ENST00000557302 DDIT4Q9NX09 232 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 MARK1Q9P0L2 795 aa14.14□□□□□ -0.15
SHMT2-228ENST00000557302 SYNJ2BP-COX16A0A087WUM0 186 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 NEDD8-MDP1E9PL57 170 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 AP5Z1O43299 807 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 CYBBP04839 570 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 SLC2A3P11169 496 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 DRD1P21728 446 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 OPRD1P41143 372 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 EIF2DP41214 584 aaKnown RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 RPS9P46781 194 aaKnown RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 GSCP56915 257 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 ZC3H12AQ5D1E8 599 aaKnown RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 DGKKQ5KSL6 1271 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 ADGRF1Q5T601 910 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 NAIF1Q69YI7 327 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 FSTL4Q6MZW2 842 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 ARCQ7LC44 396 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 PHLDB2Q86SQ0 1253 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 C3orf20Q8ND61 904 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 RNF34Q969K3 372 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 AZIN2Q96A70 460 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 XPO6Q96QU8 1125 aaKnown RBP14.13□□□□□ -0.15
SHMT2-228ENST00000557302 TAS2R14Q9NYV8 317 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 COX16Q9P0S2 106 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 DLGAP2Q9P1A6 1054 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 STOML2Q9UJZ1 356 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 TMEM59LQ9UK28 342 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 ZNF318Q5VUA4 2279 aa14.13□□□□□ -0.15
SHMT2-228ENST00000557302 TMCO5BA8MYB1 307 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 M0QYT0 321 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 DDX3XO00571 662 aaKnown RBP eCLIP14.12□□□□□ -0.151e-14■■□□□ 13.5
SHMT2-228ENST00000557302 ACSL4O60488 711 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 MOCS2O96007 188 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 CHRNB1P11230 501 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 GZMAP12544 262 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 TYRP14679 529 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 HNRNPH3P31942 346 aaKnown RBP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 CCR1P32246 355 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 FLT3P36888 993 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 SLC6A11P48066 632 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 SULT1E1P49888 294 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 NUBP1P53384 320 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 NME3Q13232 169 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 FZD5Q13467 585 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 EIF4EBP2Q13542 120 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 CCINQ13939 588 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 TSR1Q2NL82 804 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms