RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MMEP08473 750 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 CHRNB2P17787 502 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 GRIA2P42262 883 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 WASP42768 502 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 KIR2DL1P43626 348 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 ZNF165P49910 485 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 SGSHP51688 502 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 JAM2P57087 298 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 LPAL2Q16609 132 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 FBXO43Q4G163 708 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 FYB2Q5VWT5 728 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 OR6B2Q6IFH4 312 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 RFWD3Q6PCD5 774 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 FAM183BPQ6ZVS7 135 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 TAC4Q86UU9 113 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 ALLCQ8N6M5 410 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 IL17RCQ8NAC3 791 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 EPS8L1Q8TE68 723 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 ATRIPQ8WXE1 791 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 PLD4Q96BZ4 506 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 FCRL2Q96LA5 508 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 PCMTD1Q96MG8 357 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 NAP1L5Q96NT1 182 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 ACOX2Q99424 681 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 BPIFA3Q9BQP9 254 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 IER2Q9BTL4 223 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 DCLK3Q9C098 648 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 CBX8Q9HC52 389 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 DEC1Q9P2X7 70 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 XPO7Q9UIA9 1087 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 NOCTQ9UK39 431 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 HBS1LQ9Y450 684 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 PCDHGA2Q9Y5H1 932 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 FRYLO94915 3013 aa12.08□□□□□ -0.48
CCDC88C-208ENST00000554165 KIAA1549LQ6ZVL6 1849 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 A0A0A0MRY4 1105 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 SGK1O00141 431 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 GFRA2O00451 464 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 PENKP01210 267 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 TPM2P07951 284 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC6A4P31645 630 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 SOX5P35711 763 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 EIF2DP41214 584 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 HARS2P49590 506 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 TBX4P57082 545 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 BPIFB4P59827 614 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 YWHAZP63104 245 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 ARID5AQ03989 594 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 DMC1Q14565 340 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 C10orf76Q5T2E6 689 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 EGFLAMQ63HQ2 1017 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 NADSYN1Q6IA69 706 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 GRAMD4Q6IC98 578 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 OLFML1Q6UWY5 402 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 TMEM92Q6UXU6 159 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 PHLDB2Q86SQ0 1253 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 LUZP1Q86V48 1076 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 FAM217AQ8IXS0 508 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 DCLK2Q8N568 766 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 TERB1Q8NA31 727 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 SUMF1Q8NBK3 374 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 TXNDC5Q8NBS9 432 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 CPA5Q8WXQ8 436 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 GOLGA1Q92805 767 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 ERGIC2Q96RQ1 377 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 ADAM33Q9BZ11 813 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 NAT10Q9H0A0 1025 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 WDR35Q9P2L0 1181 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC8A2Q9UPR5 921 aa12.07□□□□□ -0.48
CCDC88C-208ENST00000554165 SYNJ2BP-COX16A0A087WUM0 186 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 ADAM23O75077 832 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 LMNAP02545 664 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 TFE3P19532 575 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 CHKAP35790 457 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 DGKGP49619 791 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 GEN1Q17RS7 908 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 DCAF6Q58WW2 860 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 FAM133BQ5BKY9 247 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 ZC3H12AQ5D1E8 599 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 NAA35Q5VZE5 725 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 SYT13Q7L8C5 426 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 DEFB106AQ8N104 65 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 ANKRD20A12PQ8NF67 263 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 NEK11Q8NG66 645 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 DDI1Q8WTU0 396 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 EXOC4Q96A65 974 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC39A13Q96H72 371 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 SLC2A13Q96QE2 648 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 PCDHB18PQ96TA0 734 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 PDCL3Q9H2J4 239 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 POPDC2Q9HBU9 364 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 RTN4Q9NQC3 1192 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 COX16Q9P0S2 106 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 CALCOCO1Q9P1Z2 691 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 FBXO10Q9UK96 956 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 INVSQ9Y283 1065 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 ZNF510Q9Y2H8 683 aa12.06□□□□□ -0.48
CCDC88C-208ENST00000554165 SMTNL1A8MU46 457 aa12.05□□□□□ -0.48
CCDC88C-208ENST00000554165 WASH3PC4AMC7 463 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms