RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 IFI35P80217 286 aaPredicted RBP27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 GUCY1A3Q02108 690 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 KCNJ11Q14654 390 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 PPP1R21Q6ZMI0 780 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 B4GALNT4Q76KP1 1039 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 DCP1BQ8IZD4 617 aaKnown RBP27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 ZCWPW1Q9H0M4 648 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 COX16Q9P0S2 106 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 LGALS13Q9UHV8 139 aa27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 XPO7Q9UIA9 1087 aaKnown RBP27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 ZMYND8Q9ULU4 1186 aaPredicted RBP27.28■■□□□ 1.96
CCDC88C-205ENST00000553403 SYN3O14994 580 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 DGKIO75912 1065 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 TMEM63AO94886 807 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 TSHRP16473 764 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 TTC19Q6DKK2 380 aaPredicted RBP27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 ZBED8Q8IZ13 594 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 RIBC1Q8N443 379 aaPredicted RBP27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 OLFM3Q96PB7 478 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 FRMD8Q9BZ67 464 aaPredicted RBP27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 DTLQ9NZJ0 730 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 NLRC5Q86WI3 1866 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 PTPRDP23468 1912 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 TCRBV7S3A2A0A539 114 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 GOLGA8MH3BSY2 632 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 GCATO75600 419 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 LSP1P33241 339 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 MAGEA6P43360 314 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 MMP13P45452 471 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 ZNF135P52742 658 aaPredicted RBP27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 FASTKD3Q14CZ7 662 aaKnown RBP27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 ARL13BQ3SXY8 428 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 BSPRYQ5W0U4 402 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 TAOK1Q7L7X3 1001 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 ABI1Q8IZP0 508 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 PDIK1LQ8N165 341 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 PPCSQ9HAB8 311 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 ETNK2Q9NVF9 386 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 DDIT4Q9NX09 232 aa27.27■■□□□ 1.96
CCDC88C-205ENST00000553403 PATJQ8NI35 1801 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 E7EVH7 732 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 HCAR3P49019 387 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 NRLP54845 237 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 ZSCAN26Q16670 478 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 FNBP1LQ5T0N5 605 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 KCNT2Q6UVM3 1135 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 DNAJB4Q9UDY4 337 aa27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 DYNC1LI1Q9Y6G9 523 aaKnown RBP27.26■■□□□ 1.95
CCDC88C-205ENST00000553403 C5orf60A6NFR6 353 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 CDH16O75309 829 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 TADA2AO75478 443 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 CXCR3P49682 368 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 DPYSQ14117 519 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 PAFAH1B3Q15102 231 aaKnown RBP27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 CASD1Q96PB1 797 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 KLC2Q9H0B6 622 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 RAB6BQ9NRW1 208 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 OGDHLQ9ULD0 1010 aa27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 PRG3Q9Y2Y8 225 aaPredicted RBP27.25■■□□□ 1.95
CCDC88C-205ENST00000553403 EEF2KO00418 725 aaKnown RBP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 ZNF189O75820 626 aaPredicted RBP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 GAD2Q05329 585 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 SEMA3BQ13214 749 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 RFX8Q6ZV50 586 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 TDRPQ86YL5 185 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 CCDC13Q8IYE1 715 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 PYROXD1Q8WU10 500 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 TFB1MQ8WVM0 346 aaKnown RBP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 CENPTQ96BT3 561 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 FUBP3Q96I24 572 aaKnown RBP eCLIP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 COLEC11Q9BWP8 271 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 TMPRSS4Q9NRS4 437 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 TNFRSF10BO14763 440 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 HOXA2O43364 376 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 MAP3K6O95382 1288 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 NFE2Q16621 373 aaPredicted RBP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 TAB3Q8N5C8 712 aaPredicted RBP27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 ATP11CQ8NB49 1132 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 ADAM32Q8TC27 787 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 EDEM1Q92611 657 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 ZNF333Q96JL9 665 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 VPS37BQ9H9H4 285 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 RAD54BQ9Y620 910 aa27.24■■□□□ 1.95
CCDC88C-205ENST00000553403 CREB3O43889 395 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 MYCP01106 439 aaPredicted RBP27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 PHBP35232 272 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 GRIK1P39086 918 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 MSS51Q4VC12 460 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 SLC39A12Q504Y0 691 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 DEFB118Q96PH6 123 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 EPN3Q9H201 632 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 EURLQ9NYK6 297 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 LRFN2Q9ULH4 789 aa27.23■■□□□ 1.95
CCDC88C-205ENST00000553403 DCLK1O15075 740 aa27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 MFSD11O43934 449 aa27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 SLC5A3P53794 718 aa27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 HEATR6Q6AI08 1181 aaKnown RBP27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 PDZD4Q76G19 769 aaPredicted RBP27.22■■□□□ 1.95
CCDC88C-205ENST00000553403 EXOC3L1Q86VI1 746 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms