RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PLCD4Q9BRC7 762 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 KATNBL1Q9H079 304 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 MYLK2Q9H1R3 596 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TMEM30AQ9NV96 361 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 CPSF2Q9P2I0 782 aaKnown RBP5.79□□□□□ -1.48
LIMA1-215ENST00000552823 TXNDC16Q9P2K2 825 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 HCSTQ9UBK5 93 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 PACSIN3Q9UKS6 424 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 C2CD2Q9Y426 696 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 NRCAMQ92823 1304 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ANKRD12Q6UB98 2062 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DOCK1Q14185 1865 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 FAM237BA0A1B0GVD1 139 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CCL22O00626 93 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PTGESO14684 152 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 LYPLA1O75608 230 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 THP07101 528 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 FAM200BP0CF97 657 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CTGFP29279 349 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 OR1G1P47890 313 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 BCAT1P54687 386 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 YWHAZP63104 245 aaKnown RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 SEPT6Q14141 434 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 NOMO1Q15155 1222 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DCAF4L1Q3SXM0 396 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 LRRC38Q5VT99 294 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 FAM219BQ5XKK7 198 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CYB5D1Q6P9G0 228 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 C6orf89Q6UWU4 347 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 TFAP2DQ7Z6R9 452 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CMC1Q7Z7K0 106 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 TTC7BQ86TV6 843 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 MIB1Q86YT6 1006 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 RNF135Q8IUD6 432 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 AGGF1Q8N302 714 aaeCLIP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DCLK2Q8N568 766 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 SLC25A41Q8N5S1 370 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PAF1Q8N7H5 531 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ANKRD52Q8NB46 1076 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 SHCBP1Q8NEM2 672 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CCT6BQ92526 530 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CAB39LQ9H9S4 337 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PIGVQ9NUD9 493 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 TSR3Q9UJK0 312 aaKnown RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DRG1Q9Y295 367 aaKnown RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PAPPA2Q9BXP8 1791 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 RBBP6Q7Z6E9 1792 aaKnown RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 RNF103O00237 685 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 C2CD2LO14523 706 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PMPCBO75439 489 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF865P0CJ78 1059 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CSH1P0DML2 217 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CSH2P0DML3 217 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 VAV1P15498 845 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 L1CAMP32004 1257 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ETFBP38117 255 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 GRIK1P39086 918 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 GLRBP48167 497 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 TPI1P60174 286 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 MGAT5Q09328 741 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DLG2Q15700 870 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DDR2Q16832 855 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 TIGD5Q53EQ6 642 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CGB2Q6NT52 195 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 UNC5AQ6ZN44 842 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 OTOP3Q7RTS5 596 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 OTOAQ7RTW8 1153 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ARID3BQ8IVW6 561 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DTX3LQ8TDB6 740 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF669Q96BR6 464 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PCED1BQ96HM7 432 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 USP29Q9HBJ7 922 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 CRTAC1Q9NQ79 661 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ANLNQ9NQW6 1124 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 DTLQ9NZJ0 730 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 MPP6Q9NZW5 540 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 PPARGC1AQ9UBK2 798 aaKnown RBP5.78□□□□□ -1.48
LIMA1-215ENST00000552823 SHOC2Q9UQ13 582 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 SLC27A5Q9Y2P5 690 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 ARL2BPQ9Y2Y0 163 aa5.78□□□□□ -1.48
LIMA1-215ENST00000552823 TRPA1O75762 1119 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 TBX18O95935 607 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 KRT16P08779 473 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 ERCC2P18074 760 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 CCND3P30281 292 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-215ENST00000552823 GPR15P49685 360 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 PGFP49763 221 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 ATXN3P54252 364 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-215ENST00000552823 ATN1P54259 1190 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-215ENST00000552823 COPS2P61201 443 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 KDSRQ06136 332 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 NR1H3Q13133 447 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 CHI3L2Q15782 390 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 NOMO2Q5JPE7 1267 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 EFHC2Q5JST6 749 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 ANKRD20A2Q5SQ80 823 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 UBXN11Q5T124 520 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 CERCAMQ5T4B2 595 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 ANKRD20A1Q5TYW2 823 aa5.77□□□□□ -1.49
LIMA1-215ENST00000552823 ANKRD20A3Q5VUR7 823 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms