RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CEPT1Q9Y6K0 416 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SCINQ9Y6U3 715 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DOCK5Q9H7D0 1870 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SMIM31A0A1B0GVY4 71 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 AP1G1O43747 822 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ONECUT3O60422 494 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PEX10O60683 326 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ZBTB7AO95365 584 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ALDOAP04075 364 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 HNRNPCP07910 306 aaKnown RBP eCLIP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 NR3C2P08235 984 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SNRPAP09012 282 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SRGAP2BP0DMP2 458 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CDH2P19022 906 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PSMA2P25787 234 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TNFSF9P41273 254 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PKNOX1P55347 436 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MAP7Q14244 749 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TRNP1Q6NT89 227 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 DENND1BQ6P3S1 775 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 AAGABQ6PD74 315 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 BBS12Q6ZW61 710 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ZBTB46Q86UZ6 589 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF410Q86VK4 478 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 RFX6Q8HWS3 928 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 C10orf107Q8IVU9 208 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ICA1LQ8NDH6 482 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MSTO1Q9BUK6 570 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CCDC28BQ9BUN5 200 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 POLR3FQ9H1D9 316 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 COPS7BQ9H9Q2 264 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 DTNAQ9Y4J8 743 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PCDHA10Q9Y5I2 948 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SCN9AQ15858 1988 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 THSD7AQ9UPZ6 1657 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SLC15A5A6NIM6 579 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 INO80B-WBP1J3KQ70 363 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 NOP56O00567 594 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CASQ2O14958 399 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 DGKIO75912 1065 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 APRTP07741 180 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PDGFRBP09619 1106 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 COL6A2P12110 1019 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ARSAP15289 507 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 XRCC1P18887 633 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PSMD7P51665 324 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 THOP1P52888 689 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CLDN10P78369 228 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SLC9B1Q4ZJI4 515 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ANGEL2Q5VTE6 544 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 LRRC8BQ6P9F7 803 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 DARS2Q6PI48 645 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TSHZ1Q6ZSZ6 1077 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CYP4V2Q6ZWL3 525 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF534Q76KX8 674 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TNS4Q8IZW8 715 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 FBXW8Q8N3Y1 598 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MARVELD2Q8N4S9 558 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PQLC3Q8N755 202 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PIWIL2Q8TC59 973 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 FAM110BQ8TC76 370 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SYTL5Q8TDW5 730 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 USP13Q92995 863 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 FAF2Q96CS3 445 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 VCPIP1Q96JH7 1222 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 OR52B2Q96RD2 323 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CPXM1Q96SM3 734 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TARS2Q9BW92 718 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 YIPF2Q9BWQ6 316 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 INO80BQ9C086 356 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MIS12Q9H081 205 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PPCSQ9HAB8 311 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 GPATCH2LQ9NWQ4 482 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ZC3H7BQ9UGR2 993 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 GNEQ9Y223 722 aaKnown RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 HES2Q9Y543 173 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 GOLGA8QA0A0J9YX86 632 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 C7orf72A4D263 438 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 GOLGA8OA6NCC3 632 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 GOLGA8NF8WBI6 632 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PLOD2O00469 737 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 AIM2O14862 343 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 STBD1O95210 358 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ICAM1P05362 532 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 EPHA3P29320 983 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MIPP30301 263 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PTPN7P35236 360 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SERPINB5P36952 375 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MAGEA8P43361 318 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ABCG1P45844 678 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 RAP1GAPP47736 663 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 SLC1A6P48664 564 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CCR3P51677 355 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF132P52740 706 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MTTPP55157 894 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CDH15P55291 814 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PRKCEQ02156 737 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 WASHC5Q12768 1159 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TNFAIP1Q13829 316 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PCLAFQ15004 111 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms