RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 CCDC163A0A0D9SF12 145 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 SYCE3A1L190 88 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 LSM8O95777 96 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 CAVIN2O95810 425 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 HMBSP08397 361 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 NCAM1P13591 858 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 TNFRSF4P43489 277 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 POLR2FP61218 127 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 YWHAZP63104 245 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 MRPS21P82921 87 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 SKOR2Q2VWA4 1001 aaPredicted RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 HSF5Q4G112 596 aaPredicted RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 PTPN20Q4JDL3 420 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 FYB2Q5VWT5 728 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 NUGGCQ68CJ6 796 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 TPGS1Q6ZTW0 290 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 ZNF677Q86XU0 584 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 ZDHHC17Q8IUH5 632 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 DENND1CQ8IV53 801 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 PASD1Q8IV76 773 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 TERB1Q8NA31 727 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 TMEM35BQ8NCS4 154 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 C1orf131Q8NDD1 294 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 RPLP0P6Q8NHW5 317 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 KCNV2Q8TDN2 545 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 ATRIPQ8WXE1 791 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 NKD2Q969F2 451 aaPredicted RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 AZIN2Q96A70 460 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 FAM149B1Q96BN6 582 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 P2RY11Q96G91 374 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 SLC39A13Q96H72 371 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 PHF12Q96QT6 1004 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 IRX2Q9BZI1 471 aaPredicted RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 POPDC2Q9HBU9 364 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 RTN4Q9NQC3 1192 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 TJP2Q9UDY2 1190 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 NOCTQ9UK39 431 aaKnown RBP12.38□□□□□ -0.43
YBX3-217ENST00000546164 NAALADL1Q9UQQ1 740 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 STARD13Q9Y3M8 1113 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 FRYLO94915 3013 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 MYOFQ9NZM1 2061 aa12.38□□□□□ -0.43
YBX3-217ENST00000546164 ZNF292O60281 2723 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 PRR23AA6NEV1 266 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 NEDD8-MDP1E9PL57 170 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 MSI1O43347 362 aaKnown RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 HSF2BPO75031 334 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 IGLV3-25P01717 112 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 CISD3P0C7P0 127 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 SOX5P35711 763 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 STAT1P42224 750 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 KIR2DL1P43626 348 aaPredicted RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 TBX4P57082 545 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 EIF4EBP2Q13542 120 aaPredicted RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 EFHC1Q5JVL4 640 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 SYPL2Q5VXT5 272 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 GRAMD4Q6IC98 578 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 OLFML1Q6UWY5 402 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 NUDT18Q6ZVK8 323 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 SLC26A9Q7LBE3 791 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 NOP9Q86U38 636 aaKnown RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 ALYREFQ86V81 257 aaKnown RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 UNC45BQ8IWX7 931 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 CAMKK1Q8N5S9 505 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 NAT16Q8N8M0 369 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 NEK11Q8NG66 645 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 IPO4Q8TEX9 1081 aaKnown RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 PIWIL1Q96J94 861 aaKnown RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 SLC2A13Q96QE2 648 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 SPAG5Q96R06 1193 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 DNAJC17Q9NVM6 304 aaKnown RBP12.37□□□□□ -0.43
YBX3-217ENST00000546164 TLR6Q9Y2C9 796 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 SLC27A6Q9Y2P4 619 aa12.37□□□□□ -0.43
YBX3-217ENST00000546164 TBC1D3BA6NDS4 549 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 CAPN9O14815 690 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 GFRA3O60609 400 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 LMNAP02545 664 aaKnown RBP12.36□□□□□ -0.43
YBX3-217ENST00000546164 ERBB2P04626 1255 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 CYBBP04839 570 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 CNR2P34972 360 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 SCNN1AP37088 669 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 GABRB2P47870 512 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 CDR2Q01850 454 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 KDSRQ06136 332 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 DMC1Q14565 340 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 TAF5Q15542 800 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 MPPE1Q53F39 396 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 ADGRF1Q5T601 910 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 RNF43Q68DV7 783 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 TOGARAM2Q6ZUX3 1019 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 FAM183BPQ6ZVS7 135 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 ASCL5Q7RTU5 278 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 TAC4Q86UU9 113 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 LONP2Q86WA8 852 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 SFTPA1Q8IWL2 248 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 ZNF397Q8NF99 534 aaPredicted RBP12.36□□□□□ -0.43
YBX3-217ENST00000546164 FCRL2Q96LA5 508 aaPredicted RBP12.36□□□□□ -0.43
YBX3-217ENST00000546164 SLC2A11Q9BYW1 496 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 EPC1Q9H2F5 836 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 PDCL3Q9H2J4 239 aa12.36□□□□□ -0.43
YBX3-217ENST00000546164 NLRC4Q9NPP4 1024 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms