RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RAD54BQ9Y620 910 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 GON4LQ3T8J9 2241 aa8.9□□□□□ -0.98
USP28-215ENST00000545608 MYO18AQ92614 2054 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 IGHV1OR15-9A0A0B4J2B8 117 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 WASH3PC4AMC7 463 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 TOP3BO95985 862 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 HMBSP08397 361 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 RALAP11233 206 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 ENGP17813 658 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 TRIM21P19474 475 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 CSRP1P21291 193 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 GTF2H1P32780 548 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 MAPK8P45983 427 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 DGKGP49619 791 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 RAD23BP54727 409 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 RPL6Q02878 288 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 GOLGA8FQ08AF8 430 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 GOLGA8DPQ0D2H9 430 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 LMAN2Q12907 356 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 SPDYCQ5MJ68 293 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 PEAR1Q5VY43 1037 aaPredicted RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 SDE2Q6IQ49 451 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 SLC23A3Q6PIS1 610 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 PIGZQ86VD9 579 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 SLC41A1Q8IVJ1 513 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 SLC4A11Q8NBS3 891 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 CCDC150Q8NCX0 1101 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 DEFB124Q8NES8 71 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 TMEM176AQ96HP8 235 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 GABRG3Q99928 467 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 NUSAP1Q9BXS6 441 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 SLC6A17Q9H1V8 727 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 CD93Q9NPY3 652 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 CISHQ9NSE2 258 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 RAB20Q9NX57 234 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 CACNA2D2Q9NY47 1150 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 CLIC5Q9NZA1 410 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 FKBPLQ9UIM3 349 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 RASAL2Q9UJF2 1139 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 THADAQ6YHU6 1953 aa8.89□□□□□ -0.99
USP28-215ENST00000545608 MAP1BP46821 2468 aaKnown RBP8.89□□□□□ -0.99
USP28-215ENST00000545608 TULP2O00295 520 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 CETN3O15182 167 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 AP5Z1O43299 807 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 PENKP01210 267 aaPredicted RBP8.88□□□□□ -0.99
USP28-215ENST00000545608 CEACAM1P13688 526 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 JUNDP17535 347 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 SPINK2P20155 84 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 PRCPP42785 496 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 MXI1P50539 228 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 COG7P83436 770 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 ZNF33AQ06730 810 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 ZNF252P-AS1Q0IIN9 211 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 EFEMP1Q12805 493 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 FOXC1Q12948 553 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 PNOCQ13519 176 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 PTPRNQ16849 979 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 GEN1Q17RS7 908 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 EDRF1Q3B7T1 1238 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 RAB41Q5JT25 222 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 FYB2Q5VWT5 728 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 ARHGAP17Q68EM7 881 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 SLC36A4Q6YBV0 504 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 TADA2BQ86TJ2 420 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 FBXL13Q8NEE6 735 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 NDRG1Q92597 394 aaKnown RBP8.88□□□□□ -0.99
USP28-215ENST00000545608 WNT2BQ93097 391 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 FAXDC2Q96IV6 333 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 MRGPRX1Q96LB2 322 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 UBXN6Q9BZV1 441 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 SCAND2PQ9GZW5 306 aaPredicted RBP8.88□□□□□ -0.99
USP28-215ENST00000545608 CLEC4EQ9ULY5 219 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 SLC6A14Q9UN76 642 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 CYP8B1Q9UNU6 501 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 WASF3Q9UPY6 502 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 ZNF510Q9Y2H8 683 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 STON1Q9Y6Q2 735 aa8.88□□□□□ -0.99
USP28-215ENST00000545608 NUP205Q92621 2012 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 SLC12A8A0AV02 714 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 C1QTNF9BB2RNN3 333 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 GFRA2O00451 464 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 ZBTB24O43167 697 aaPredicted RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 ZNF217O75362 1048 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CFIP05156 583 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 C1QTNF9P0C862 333 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 EPB41P11171 864 aaKnown RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 CORO1AP31146 461 aaKnown RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 DPP6P42658 865 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 PMS1P54277 932 aaKnown RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 MFAP3P55082 362 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 YWHAGP61981 247 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP28-215ENST00000545608 DUOXA1Q1HG43 343 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CBWD6Q4V339 395 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CBWD3Q5JTY5 395 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CBWD5Q5RIA9 395 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 PM20D1Q6GTS8 502 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 BHLHA9Q7RTU4 235 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 DENND1CQ8IV53 801 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 TRIML1Q8N9V2 468 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 ANKRD52Q8NB46 1076 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms