RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LRRC8DQ7L1W4 858 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 NLRP14Q86W24 1093 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 SCN4BQ8IWT1 228 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 AGGF1Q8N302 714 aaeCLIP15.04■□□□□ -0
CLIP1-216ENST00000541410 SUSD3Q96L08 255 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 CCT8L2Q96SF2 557 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 PRMT1Q99873 361 aaKnown RBP15.04■□□□□ -0
CLIP1-216ENST00000541410 NCAPGQ9BPX3 1015 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 FOXP3Q9BZS1 431 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 KIF9Q9HAQ2 790 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 WDR6Q9NNW5 1121 aaKnown RBP15.04■□□□□ -0
CLIP1-216ENST00000541410 FKTNO75072 461 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 CYP11A1P05108 521 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 SKIP12755 728 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 VAV1P15498 845 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 GRIK1P39086 918 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 ELK3P41970 407 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 ATN1P54259 1190 aaPredicted RBP15.04■□□□□ -0
CLIP1-216ENST00000541410 KCNJ11Q14654 390 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 GPNMBQ14956 572 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 SLC39A12Q504Y0 691 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 BSPRYQ5W0U4 402 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 PDIK1LQ8N165 341 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 PKMYT1Q99640 499 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 TRIM56Q9BRZ2 755 aaKnown RBP15.04■□□□□ -0
CLIP1-216ENST00000541410 PIH1D1Q9NWS0 290 aaKnown RBP15.04■□□□□ -0
CLIP1-216ENST00000541410 ABI2Q9NYB9 513 aaPredicted RBP15.04■□□□□ -0
CLIP1-216ENST00000541410 SEPT10Q9P0V9 454 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 VWA8A3KMH1 1905 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 TMEM120BA0PK00 339 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 BCLAF3A2AJT9 711 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 NT5C1B-RDH14C9J2C7 533 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 KBTBD13C9JR72 458 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 EEF2KO00418 725 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 FBXO21O94952 628 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 IVLP07476 585 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 ADRA1BP35368 520 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 GPR15P49685 360 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 AP1B1Q10567 949 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 MPP2Q14168 576 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 STAT4Q14765 748 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 MTFR1Q15390 333 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 QPCTQ16769 361 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 TCTN1Q2MV58 587 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 SLC45A4Q5BKX6 768 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 EFHC2Q5JST6 749 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 BNIPLQ7Z465 357 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 PALM2Q8IXS6 379 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 COLGALT2Q8IYK4 626 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 THEM5Q8N1Q8 247 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 CCNYQ8ND76 341 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 GPR152Q8TDT2 470 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 CCDC77Q9BR77 488 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 CSNK1G1Q9HCP0 422 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 DMAP1Q9NPF5 467 aaPredicted RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 INTS9Q9NV88 658 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 PQBP1O60828 265 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 CDH16O75309 829 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 GRIA1P42261 906 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 TSPY1Q01534 308 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 VSTM1Q6UX27 236 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 DENND5BQ6ZUT9 1274 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 CROCCP2Q86T23 111 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 TAX1BP1Q86VP1 789 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 SPATA2LQ8IUW3 424 aaPredicted RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 REM2Q8IYK8 340 aaPredicted RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 SLC43A3Q8NBI5 491 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 SLAIN1Q8ND83 568 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 FBF1Q8TES7 1133 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 ZNF473Q8WTR7 871 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 SCLYQ96I15 445 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 FAM193BQ96PV7 902 aaPredicted RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 XPO6Q96QU8 1125 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 TSEN34Q9BSV6 310 aaKnown RBP15.03■□□□□ -0
CLIP1-216ENST00000541410 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.03■□□□□ -0
CLIP1-216ENST00000541410 PAK5Q9P286 719 aa15.03■□□□□ -0
CLIP1-216ENST00000541410 GMNCA6NCL1 334 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 RASA4BC9J798 803 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 RASA4O43374 803 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 TRAPPC3O43617 180 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 SPAG7O75391 227 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 EOMESO95936 686 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 BRAFP15056 766 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 ARPP19P56211 112 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 PKN2Q16513 984 aaKnown RBP15.02■□□□□ -0
CLIP1-216ENST00000541410 HEATR6Q6AI08 1181 aaKnown RBP15.02■□□□□ -0
CLIP1-216ENST00000541410 RFX8Q6ZV50 586 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 TAOK1Q7L7X3 1001 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 TAC4Q86UU9 113 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 TTC9BQ8N6N2 239 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 GDAP1Q8TB36 358 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 DEPDC1BQ8WUY9 529 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 ATXN2LQ8WWM7 1075 aaKnown RBP15.02■□□□□ -0
CLIP1-216ENST00000541410 RNF34Q969K3 372 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 TTC25Q96NG3 672 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 DEFB118Q96PH6 123 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 CFHR5Q9BXR6 569 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 TKTL2Q9H0I9 626 aa15.02■□□□□ -0
CLIP1-216ENST00000541410 STMN4Q9H169 189 aaPredicted RBP15.02■□□□□ -0
CLIP1-216ENST00000541410 CNOT10Q9H9A5 744 aaKnown RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms