RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TIGD1Q96MW7 591 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 XPO6Q96QU8 1125 aaKnown RBP11.1□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF518BQ9C0D4 1074 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 MIR1-1HGQ9H1L0 117 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CYP3A43Q9HB55 503 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 CSNK1G1Q9HCP0 422 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 SPHK2Q9NRA0 654 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 TMEM30AQ9NV96 361 aa11.1□□□□□ -0.63
CPSF1-203ENST00000527916 GFRA2O00451 464 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 BCAT2O15382 392 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 HLA-DRAP01903 254 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 NCAM1P13591 858 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 HLA-EP13747 358 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 TRIM21P19474 475 aaKnown RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 ASPAP45381 313 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 NDST1P52848 882 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 PPP3CAQ08209 521 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 INCA1Q0VD86 236 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 CAMK2BQ13554 666 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 STARD3Q14849 445 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 HLA-BQ31612 363 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF658Q5TYW1 1059 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 ACOT1Q86TX2 421 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 METTL3Q86U44 580 aaKnown RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 FAM35AQ86V20 835 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 MIB1Q86YT6 1006 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 FUKQ8N0W3 1084 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 BAHD1Q8TBE0 780 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 SMARCD1Q96GM5 515 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 TOE1Q96GM8 510 aaKnown RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 KCNK16Q96T55 309 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 GABRG3Q99928 467 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 DUSP9Q99956 384 aaKnown RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 IMPG2Q9BZV3 1241 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 IL21RQ9HBE5 538 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 TMEM8AQ9HCN3 771 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 DMAP1Q9NPF5 467 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 DNAJC17Q9NVM6 304 aaKnown RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 TOR4AQ9NXH8 423 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 FNDC3AQ9Y2H6 1198 aaKnown RBP11.09□□□□□ -0.63
CPSF1-203ENST00000527916 RAI2Q9Y5P3 530 aa11.09□□□□□ -0.63
CPSF1-203ENST00000527916 HECTD1Q9ULT8 2610 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 CETN3O15182 167 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 RRP8O43159 456 aaKnown RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 TNFSF14O43557 240 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 STX10O60499 249 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 C1QL1O75973 258 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 ZDHHC11BP0C7U3 371 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 OXTRP30559 389 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 PIK3CAP42336 1068 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 PRCPP42785 496 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 GCLMP48507 274 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 TUBP50607 506 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 FKBP3Q00688 224 aaKnown RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 IFRD2Q12894 506 aaPredicted RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 PNOCQ13519 176 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 SMAD1Q15797 465 aaKnown RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 HECTD3Q5T447 861 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 KRT39Q6A163 491 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 DBX2Q6ZNG2 339 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 TMEM25Q86YD3 366 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 BBS7Q8IWZ6 715 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 TTC39CQ8N584 583 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 CCDC150Q8NCX0 1101 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 TAS1R2Q8TE23 839 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 NXPE2Q96DL1 559 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 ERLEC1Q96DZ1 483 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 ACOX2Q99424 681 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 HNRNPABQ99729 332 aaKnown RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 MED10Q9BTT4 135 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 GPR174Q9BXC1 333 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 DNAI2Q9GZS0 605 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 NACA2Q9H009 215 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 FBXO44Q9H4M3 255 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 CD248Q9HCU0 757 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 PNPLA8Q9NP80 782 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 WSB2Q9NYS7 404 aaPredicted RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 WDR35Q9P2L0 1181 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 HOOK1Q9UJC3 728 aaKnown RBP11.08□□□□□ -0.64
CPSF1-203ENST00000527916 HCN2Q9UL51 889 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 COL6A6A6NMZ7 2263 aa11.08□□□□□ -0.64
CPSF1-203ENST00000527916 FAM149AA5PLN7 773 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 COCHO43405 550 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 AP1G2O75843 785 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SMC2O95347 1197 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 EPB41P11171 864 aaKnown RBP11.07□□□□□ -0.64
CPSF1-203ENST00000527916 GRK6P43250 576 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 ZNF132P52740 706 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SLC5A3P53794 718 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 INAVAQ3KP66 663 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 CCDC157Q569K6 752 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 DCAF12L1Q5VU92 463 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SPOPLQ6IQ16 392 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SCARA5Q6ZMJ2 495 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 MARCH9Q86YJ5 346 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 ZC3H3Q8IXZ2 948 aaKnown RBP11.07□□□□□ -0.64
CPSF1-203ENST00000527916 ZNF843Q8N446 348 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 ZMIZ2Q8NF64 920 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SCAMP5Q8TAC9 235 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 FBXO32Q969P5 355 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms