RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SIRPGQ9P1W8 387 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 DCAF8L1A6NGE4 600 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 KPNA7A9QM74 516 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 XPOTO43592 962 aaKnown RBP21.94■■□□□ 1.1
VPS28-205ENST00000526204 DGKIO75912 1065 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 RECQL4O94761 1208 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 PDGFRBP09619 1106 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 CCDC130P13994 396 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 AXLP30530 894 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 CRHR1P34998 444 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 ATXN1P54253 815 aaKnown RBP21.94■■□□□ 1.1
VPS28-205ENST00000526204 CDK18Q07002 472 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 GLRA4Q5JXX5 417 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 FAM182AQ5T1J6 154 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 NCBP2-AS2Q69YL0 99 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 TIFABQ6ZNK6 161 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 ENDOVQ8N8Q3 282 aaKnown RBP21.94■■□□□ 1.1
VPS28-205ENST00000526204 LRRN4Q8WUT4 740 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 KBTBD7Q8WVZ9 684 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 OXNAD1Q96HP4 312 aaPredicted RBP21.94■■□□□ 1.1
VPS28-205ENST00000526204 LPIN3Q9BQK8 851 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 SLC13A1Q9BZW2 595 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 FAM49AQ9H0Q0 323 aaPredicted RBP21.94■■□□□ 1.1
VPS28-205ENST00000526204 ARL8BQ9NVJ2 186 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 MOCS1Q9NZB8 636 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 MORF4L1Q9UBU8 362 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 SLC45A1Q9Y2W3 748 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 HES2Q9Y543 173 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 BIRC5O15392 142 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 MYL2P10916 166 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 MATKP42679 507 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 CLNS1AP54105 237 aaKnown RBP21.94■■□□□ 1.1
VPS28-205ENST00000526204 TMPRSS15P98073 1019 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 ANKRD20A2Q5SQ80 823 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 ANKRD20A1Q5TYW2 823 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 IQSEC1Q6DN90 963 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 DPP9Q86TI2 863 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.94■■□□□ 1.14e-6■□□□□ 11.3
VPS28-205ENST00000526204 MAB21L3Q8N8X9 362 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 ARMC2Q8NEN0 867 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 CFAP61Q8NHU2 1237 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 DEPDC1BQ8WUY9 529 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 OLFM3Q96PB7 478 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 NUDCD1Q96RS6 583 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 FERMT1Q9BQL6 677 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 BATF3Q9NR55 127 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 USP3Q9Y6I4 520 aa21.94■■□□□ 1.1
VPS28-205ENST00000526204 A0A0A0MRY4 1105 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 PDHXO00330 501 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 STK10O94804 968 aaKnown RBP21.93■■□□□ 1.1
VPS28-205ENST00000526204 DARSP14868 501 aaKnown RBP21.93■■□□□ 1.1
VPS28-205ENST00000526204 GNAZP19086 355 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 TMEM62Q0P6H9 643 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 TRMT10BQ6PF06 316 aaKnown RBP21.93■■□□□ 1.1
VPS28-205ENST00000526204 CCNJLQ8IV13 435 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 NUDCD3Q8IVD9 361 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 NDUFAF2Q8N183 169 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 MPP5Q8N3R9 675 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 CCDC185Q8N715 623 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 TNIP3Q96KP6 325 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 SPATA13Q96N96 652 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 ABHD16BQ9H3Z7 469 aa21.93■■□□□ 1.1
VPS28-205ENST00000526204 NXF3Q9H4D5 531 aaKnown RBP21.93■■□□□ 1.1
VPS28-205ENST00000526204 UGT1A9O60656 530 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 BMPR2Q13873 1038 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 DBN1Q16643 649 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 SLC25A52Q3SY17 297 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 STEAP4Q687X5 459 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 APPL2Q8NEU8 664 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 MIPEPQ99797 713 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 DENND2DQ9H6A0 471 aaPredicted RBP21.92■■□□□ 1.1
VPS28-205ENST00000526204 UGT1A7Q9HAW7 530 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 UGT1A10Q9HAW8 530 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 UGT1A8Q9HAW9 530 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 FBXO6Q9NRD1 293 aaPredicted RBP21.92■■□□□ 1.1
VPS28-205ENST00000526204 NKX1-2Q9UD57 310 aaPredicted RBP21.92■■□□□ 1.1
VPS28-205ENST00000526204 NRCAMQ92823 1304 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 SMIM35A0A1B0GVV1 85 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 GYG2O15488 501 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 ALDH1A2O94788 518 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 TPBGLP0DKB5 382 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 GOT1P17174 413 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 GM2AP17900 193 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 AMPD1P23109 780 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 LMO2P25791 158 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 BST1Q10588 318 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 NBPF20Q3BBV1 942 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 STXBP5Q5T5C0 1151 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 MROH9Q5TGP6 573 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 SLC2A14Q8TDB8 520 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 OSMRQ99650 979 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 CADM1Q9BY67 442 aaKnown RBP21.92■■□□□ 1.1
VPS28-205ENST00000526204 DCLRE1BQ9H816 532 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 EIF2B3Q9NR50 452 aaKnown RBP21.92■■□□□ 1.1
VPS28-205ENST00000526204 FZD10Q9ULW2 581 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 SBF1O95248 1867 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 RALGAPA2Q2PPJ7 1873 aa21.92■■□□□ 1.1
VPS28-205ENST00000526204 SCN1AP35498 2009 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 SMIM28A0A1B0GU29 152 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 FAM237BA0A1B0GVD1 139 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms