RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SMOQ99835 787 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 NIF3L1Q9GZT8 377 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 APOBEC3GQ9HC16 384 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 FBRSL1Q9HCM7 1045 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 PNPLA8Q9NP80 782 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 RBM12Q9NTZ6 932 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 RAB20Q9NX57 234 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 TBC1D14Q9P2M4 693 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 COQ4Q9Y3A0 265 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 PMM2O15305 246 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 CILPO75339 1184 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 BEST1O76090 585 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 CLSTN1O94985 981 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 ABL1P00519 1130 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 FAM200BP0CF97 657 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 TRIM49P0CI25 452 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 TRIM49CP0CI26 452 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 SLC5A3P53794 718 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 FOXK2Q01167 660 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 STIM1Q13586 685 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 MAP9Q49MG5 647 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 E4F1Q66K89 784 aaPredicted RBP8.44□□□□□ -1.06
SCN1A-207ENST00000507401 ANKRD40Q6AI12 368 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 SPOPLQ6IQ16 392 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 SCARA5Q6ZMJ2 495 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 Q6ZS52 159 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 RSRC2Q7L4I2 434 aaKnown RBP8.44□□□□□ -1.06
SCN1A-207ENST00000507401 SMYD4Q8IYR2 804 aaPredicted RBP8.44□□□□□ -1.06
SCN1A-207ENST00000507401 CCDC116Q8IYX3 515 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 C12orf29Q8N999 325 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 ZMIZ2Q8NF64 920 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 ANKRD20A12PQ8NF67 263 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 SCAMP5Q8TAC9 235 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 WHAMMQ8TF30 809 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 CD101Q93033 1021 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 FBXO32Q969P5 355 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 DUSP16Q9BY84 665 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 METTL14Q9HCE5 456 aaKnown RBP8.44□□□□□ -1.06
SCN1A-207ENST00000507401 TLR8Q9NR97 1041 aaKnown RBP8.44□□□□□ -1.06
SCN1A-207ENST00000507401 RAB21Q9UL25 225 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 SCML2Q9UQR0 700 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 CPQQ9Y646 472 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 WNT6Q9Y6F9 365 aa8.44□□□□□ -1.06
SCN1A-207ENST00000507401 HELZP42694 1942 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 EIF3CLB5ME19 914 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 COCHO43405 550 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 LRP3O75074 770 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 EGFP01133 1207 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 MBL2P11226 248 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 CCDC130P13994 396 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 SDHBP21912 280 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 ATP5C1P36542 298 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 EIF2DP41214 584 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 LMAN1P49257 510 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 MXI1P50539 228 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 MAP3K7CLP57077 242 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 PTK2Q05397 1052 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 DHCR24Q15392 516 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 TMEM259Q4ZIN3 620 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 CT47A1Q5JQC4 288 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 LAIR1Q6GTX8 287 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 KLHDC10Q6PID8 442 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 RHBDF2Q6PJF5 856 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 GBP6Q6ZN66 633 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 CLEC20AQ6ZU45 233 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 SYT13Q7L8C5 426 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 TADA2BQ86TJ2 420 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 WDR5BQ86VZ2 330 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 NEK11Q8NG66 645 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 ADAM32Q8TC27 787 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 SEMA4DQ92854 862 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 ELMO3Q96BJ8 720 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 TMEM176AQ96HP8 235 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 CEP63Q96MT8 703 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 TWNKQ96RR1 684 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 EIF3CQ99613 913 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 NAA15Q9BXJ9 866 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 FUT8Q9BYC5 575 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 CYLDQ9NQC7 956 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 KRT82Q9NSB4 513 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 CFAP97Q9P2B7 532 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 NCDNQ9UBB6 729 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 MYO1AQ9UBC5 1043 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 ARMCX3Q9UH62 379 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 RAB23Q9ULC3 237 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 KIAA1257Q9ULG3 409 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 SMG5Q9UPR3 1016 aaKnown RBP8.43□□□□□ -1.06
SCN1A-207ENST00000507401 SLC8A2Q9UPR5 921 aa8.43□□□□□ -1.06
SCN1A-207ENST00000507401 PRR5-ARHGAP8B1AHC4 643 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 HHLA1C9JL84 531 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 PSMA7O14818 248 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 POLR3GO15318 223 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 WIPF1O43516 503 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 FOXD2O60548 495 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-207ENST00000507401 RETP07949 1114 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 OPRD1P41143 372 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 ID4P47928 161 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 FNTBP49356 437 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 KIF11P52732 1056 aa8.42□□□□□ -1.06
SCN1A-207ENST00000507401 MRPS21P82921 87 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms