RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 MARK1Q9P0L2 795 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 LSM7Q9UK45 103 aaKnown RBP9.33□□□□□ -0.92
HDAC3-211ENST00000491581 COQ4Q9Y3A0 265 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 PCDHB4Q9Y5E5 795 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 PCDHGA5Q9Y5G8 931 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 STON1Q9Y6Q2 735 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 SPEGQ15772 3267 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 ZFHX4Q86UP3 3567 aa9.33□□□□□ -0.92
HDAC3-211ENST00000491581 SPAARA0A1B0GVQ0 90 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 GOLGA6L4A6NEF3 574 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 KHNYNO15037 678 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 ZBED1O96006 694 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PENKP01210 267 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 CFIP05156 583 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 FYNP06241 537 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PNMA6AP0CW24 399 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PMLP29590 882 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 NOVA1P51513 510 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 LIMK1P53667 647 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 FKBP3Q00688 224 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 FOXC1Q12948 553 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 CAMK4Q16566 473 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 CCDC40Q4G0X9 1142 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 SGO2Q562F6 1265 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 BSPRYQ5W0U4 402 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 DENND1BQ6P3S1 775 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 LAYNQ6UX15 382 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 MMS22LQ6ZRQ5 1243 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 LPCAT2Q7L5N7 544 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 FAM124AQ86V42 546 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PPM1KQ8N3J5 372 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 RBBP8NLQ8NC74 664 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 CCDC150Q8NCX0 1101 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 EXOC4Q96A65 974 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PIWIL1Q96J94 861 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 HSPA12BQ96MM6 686 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 GSDMAQ96QA5 445 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 XPO6Q96QU8 1125 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 TSG101Q99816 390 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 GABRG3Q99928 467 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 GTPBP2Q9BX10 602 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PNPLA8Q9NP80 782 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 CLIC5Q9NZA1 410 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 ARMCX3Q9UH62 379 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 CYTH4Q9UIA0 394 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 XPO7Q9UIA9 1087 aaKnown RBP9.32□□□□□ -0.92
HDAC3-211ENST00000491581 FBXO10Q9UK96 956 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 PILRBQ9UKJ0 227 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 STARD13Q9Y3M8 1113 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 ATP6V1DQ9Y5K8 247 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 SPTBN2O15020 2390 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 WDFY3Q8IZQ1 3526 aa9.32□□□□□ -0.92
HDAC3-211ENST00000491581 C1QTNF9BB2RNN3 333 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 M0QYV0 167 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 XPO1O14980 1071 aaKnown RBP9.31□□□□□ -0.92
HDAC3-211ENST00000491581 SLC16A3O15427 465 aaKnown RBP9.31□□□□□ -0.92
HDAC3-211ENST00000491581 ALDH1A2O94788 518 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 C1QTNF9P0C862 333 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 RALAP11233 206 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 SDHBP21912 280 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 HOXD9P28356 352 aaPredicted RBP9.31□□□□□ -0.92
HDAC3-211ENST00000491581 HLA-FP30511 346 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 COPAP53621 1224 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 DAOAP59103 153 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 ZNF33AQ06730 810 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 BST2Q10589 180 aaKnown RBP9.31□□□□□ -0.92
HDAC3-211ENST00000491581 MORC3Q14149 939 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 ZNF234Q14588 700 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 TAF5Q15542 800 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 COBLL1Q53SF7 1204 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 HSP90AA4PQ58FG1 418 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 LYSMD4Q5XG99 296 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 PM20D1Q6GTS8 502 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 NADSYN1Q6IA69 706 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 KLHDC10Q6PID8 442 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 CFAP52Q8N1V2 620 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 TRIML1Q8N9V2 468 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 DDI1Q8WTU0 396 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 PRICKLE1Q96MT3 831 aaPredicted RBP9.31□□□□□ -0.92
HDAC3-211ENST00000491581 CRACR2AQ9BSW2 395 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 CIPCQ9C0C6 399 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 IL21RQ9HBE5 538 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 LRRC4Q9HBW1 653 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 RMND1Q9NWS8 449 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 STIM2Q9P246 746 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 WDR35Q9P2L0 1181 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.31□□□□□ -0.92
HDAC3-211ENST00000491581 NAALADL1Q9UQQ1 740 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 PI4KAP42356 2102 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 NUMA1Q14980 2115 aa9.31□□□□□ -0.92
HDAC3-211ENST00000491581 SMC2O95347 1197 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 VDRP11473 427 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 SLC9A1P19634 815 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 CD70P32970 193 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 BCAT1P54687 386 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 GOLGA8FQ08AF8 430 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 GOLGA8DPQ0D2H9 430 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 ZNF252P-AS1Q0IIN9 211 aa9.3□□□□□ -0.92
HDAC3-211ENST00000491581 KCNH2Q12809 1159 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms