RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 MDM4O15151 490 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 MSI1O43347 362 aaKnown RBP14.44□□□□□ -0.1
C9orf3-221ENST00000489562 MBTPS2O43462 519 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 SPOPO43791 374 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 PRPSAP2O60256 369 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 PALMO75781 387 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 TFE3P19532 575 aaPredicted RBP14.44□□□□□ -0.1
C9orf3-221ENST00000489562 COMTP21964 271 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 HDAC4P56524 1084 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 ARL13BQ3SXY8 428 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 ACBD5Q5T8D3 534 aaPredicted RBP14.44□□□□□ -0.1
C9orf3-221ENST00000489562 CC2D1AQ6P1N0 951 aaPredicted RBP14.44□□□□□ -0.1
C9orf3-221ENST00000489562 OTOP3Q7RTS5 596 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 KIAA1958Q8N8K9 716 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 ZSCAN18Q8TBC5 510 aaPredicted RBP14.44□□□□□ -0.1
C9orf3-221ENST00000489562 RNF34Q969K3 372 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 NTAN1Q96AB6 310 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 SLC39A13Q96H72 371 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 SLC22A12Q96S37 553 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 CYP2S1Q96SQ9 504 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 ADAM33Q9BZ11 813 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 DCLK3Q9C098 648 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 POMKQ9H5K3 350 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 WDCPQ9H6R7 721 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 TDP1Q9NUW8 608 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 OBP2AQ9NY56 170 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 SLC12A6Q9UHW9 1150 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 CDH22Q9UJ99 828 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 USTQ9Y2C2 406 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 CPQQ9Y646 472 aa14.44□□□□□ -0.1
C9orf3-221ENST00000489562 KIF26AQ9ULI4 1882 aaPredicted RBP14.44□□□□□ -0.1
C9orf3-221ENST00000489562 REV3LO60673 3130 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 SYNJ2BP-COX16A0A087WUM0 186 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 GRXCR2A6NFK2 248 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 NRG2O14511 850 aaPredicted RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 LATS1O95835 1130 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 KRT7P08729 469 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 MIPP30301 263 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 HARS2P49590 506 aaKnown RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 BOLA3Q53S33 107 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 SH3PXD2AQ5TCZ1 1133 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 LRRC38Q5VT99 294 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 PEX26Q7Z412 305 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 POLNQ7Z5Q5 900 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 PSTKQ8IV42 348 aaKnown RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 ARID3BQ8IVW6 561 aaPredicted RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 CELF5Q8N6W0 485 aaKnown RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 ATP6V0D2Q8N8Y2 350 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 TEKT4Q8WW24 435 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 SMARCD2Q92925 531 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 AZIN2Q96A70 460 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 E2F7Q96AV8 911 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 ACSF2Q96CM8 615 aaPredicted RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 ZFRQ96KR1 1074 aaKnown RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 FCRL2Q96LA5 508 aaPredicted RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 ASB16Q96NS5 453 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 TRPV4Q9HBA0 871 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 COX16Q9P0S2 106 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 LSM7Q9UK45 103 aaKnown RBP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 AMFRQ9UKV5 643 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 USP18Q9UMW8 372 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 ZNF510Q9Y2H8 683 aa14.43□□□□□ -0.1
C9orf3-221ENST00000489562 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.43□□□□□ -0.1
C9orf3-221ENST00000489562 DOCK4Q8N1I0 1966 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 MIF4GDA9UHW6 222 aaKnown RBP14.42□□□□□ -0.1
C9orf3-221ENST00000489562 PSTPIP1O43586 416 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 STC2O76061 302 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 GBP2P32456 591 aaPredicted RBP14.42□□□□□ -0.1
C9orf3-221ENST00000489562 SSR1P43307 286 aaKnown RBP14.42□□□□□ -0.1
C9orf3-221ENST00000489562 SCAPQ12770 1279 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 USP4Q13107 963 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 ZC3H12AQ5D1E8 599 aaKnown RBP14.42□□□□□ -0.1
C9orf3-221ENST00000489562 SCYL2Q6P3W7 929 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 NT5DC3Q86UY8 548 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 FAM131BQ86XD5 332 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 RHOT1Q8IXI2 618 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 ARFGAP1Q8N6T3 406 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 USP13Q92995 863 aaPredicted RBP14.42□□□□□ -0.1
C9orf3-221ENST00000489562 BTN2A3PQ96KV6 586 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 ZSWIM3Q96MP5 696 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 SMPD4Q9NXE4 827 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 ARHGEF38Q9NXL2 777 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 CALCOCO1Q9P1Z2 691 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 SH3BP1Q9Y3L3 701 aa14.42□□□□□ -0.1
C9orf3-221ENST00000489562 E2F8A0AVK6 867 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 CCDC66A2RUB6 948 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 KCNU1A8MYU2 1149 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 LEFTY2O00292 366 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 PRAMEF12O95522 483 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 TUBB4AP04350 444 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 HMBSP08397 361 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 LAMP2P13473 410 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 ADRA1BP35368 520 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 SLC11A2P49281 568 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 SLC25A11Q02978 314 aaKnown RBP14.41□□□□□ -0.1
C9orf3-221ENST00000489562 SMAD2Q15796 467 aaKnown RBP14.41□□□□□ -0.1
C9orf3-221ENST00000489562 AAK1Q2M2I8 961 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 EFHC2Q5JST6 749 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 FAM78AQ5JUQ0 283 aa14.41□□□□□ -0.1
C9orf3-221ENST00000489562 ZNF569Q5MCW4 686 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms