RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KRBA2Q6ZNG9 492 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 METTL3Q86U44 580 aaKnown RBP13□□□□□ -0.33
CPSF3-204ENST00000489403 PIGZQ86VD9 579 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 FOXJ1Q92949 421 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 EEF2KMTQ96G04 330 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 PIWIL1Q96J94 861 aaKnown RBP13□□□□□ -0.33
CPSF3-204ENST00000489403 DCLK3Q9C098 648 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 DNAI2Q9GZS0 605 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 MKRN2Q9H000 416 aaKnown RBP13□□□□□ -0.33
CPSF3-204ENST00000489403 GOLPH3LQ9H4A5 285 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 FAM124BQ9H5Z6 455 aaPredicted RBP13□□□□□ -0.33
CPSF3-204ENST00000489403 PRDM16Q9HAZ2 1276 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 RAB20Q9NX57 234 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 WSB2Q9NYS7 404 aaPredicted RBP13□□□□□ -0.33
CPSF3-204ENST00000489403 KLK13Q9UKR3 277 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 CLEC4EQ9ULY5 219 aa13□□□□□ -0.33
CPSF3-204ENST00000489403 SLC12A8A0AV02 714 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 KCNJ18B7U540 433 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 NPC1O15118 1278 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 ZNF132P52740 706 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 YWHAGP61981 247 aaKnown RBP eCLIP12.99□□□□□ -0.33
CPSF3-204ENST00000489403 ZNF234Q14588 700 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 STARD3Q14849 445 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 EDRF1Q3B7T1 1238 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 SYCP2LQ5T4T6 812 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 BHLHA9Q7RTU4 235 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 ANKS1BQ7Z6G8 1248 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 DENND1CQ8IV53 801 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 FAM217AQ8IXS0 508 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 SMYD4Q8IYR2 804 aaPredicted RBP12.99□□□□□ -0.33
CPSF3-204ENST00000489403 ARHGAP18Q8N392 663 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 CPXM2Q8N436 756 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 TTC39CQ8N584 583 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 RBBP8NLQ8NC74 664 aaPredicted RBP12.99□□□□□ -0.33
CPSF3-204ENST00000489403 FBXL13Q8NEE6 735 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 UCMAQ8WVF2 138 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 TATDN2Q93075 761 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 TOE1Q96GM8 510 aaKnown RBP12.99□□□□□ -0.33
CPSF3-204ENST00000489403 CAMK1GQ96NX5 476 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 UBXN6Q9BZV1 441 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 ITM2CQ9NQX7 267 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 MARCH2Q9P0N8 246 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 SUSD2Q9UGT4 822 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 STRIP2Q9ULQ0 834 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 MSRB2Q9Y3D2 182 aa12.99□□□□□ -0.33
CPSF3-204ENST00000489403 MUC22E2RYF6 1773 aaPredicted RBP12.99□□□□□ -0.33
CPSF3-204ENST00000489403 MEI4A8MW99 385 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 H0Y626 953 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 TULP2O00295 520 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 SH3BP5O60239 455 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 TRIM16O95361 564 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 CYBBP04839 570 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 NCAM1P13591 858 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 GNSP15586 552 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 PRKCHP24723 683 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 TKTL1P51854 596 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 COPAP53621 1224 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 GRIK2Q13002 908 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 SLC14A1Q13336 389 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 CBWD6Q4V339 395 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 CBWD3Q5JTY5 395 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 WDR45BQ5MNZ6 344 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 CBWD5Q5RIA9 395 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 TMEM215Q68D42 235 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 PM20D1Q6GTS8 502 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 RSRC2Q7L4I2 434 aaKnown RBP12.98□□□□□ -0.33
CPSF3-204ENST00000489403 CHCHD4Q8N4Q1 142 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 ANKRD52Q8NB46 1076 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 SORCS1Q8WY21 1168 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 ZCCHC14Q8WYQ9 949 aaKnown RBP12.98□□□□□ -0.33
CPSF3-204ENST00000489403 DNASE2BQ8WZ79 361 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 NDRG1Q92597 394 aaKnown RBP12.98□□□□□ -0.33
CPSF3-204ENST00000489403 PLD4Q96BZ4 506 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 GPR174Q9BXC1 333 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 ULBP1Q9BZM6 244 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 ELOVL2Q9NXB9 296 aa12.98□□□□□ -0.33
CPSF3-204ENST00000489403 CACNA1EQ15878 2313 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 ZZEF1O43149 2961 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 A0A1B0GTW7 788 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 A0A1W2PQ27 194 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 A0A1W2PQ64 194 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 SRRM3A6NNA2 597 aaPredicted RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 XPO1O14980 1071 aaKnown RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 SYNCRIPO60506 623 aaKnown RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 ZNF202O95125 648 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 ZBED1O96006 694 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 EPB41P11171 864 aaKnown RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 HOXD9P28356 352 aaPredicted RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 TPMTP51580 245 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 PDE4CQ08493 712 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 HNRNPDQ14103 355 aaKnown RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 EIF4HQ15056 248 aaKnown RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 TRIP4Q15650 581 aaPredicted RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 GOLGA7BQ2TAP0 167 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 DCAF12L1Q5VU92 463 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 TMPRSS6Q8IU80 811 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 NAXDQ8IW45 347 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 DDI1Q8WTU0 396 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 PRCCQ92733 491 aaPredicted RBP12.97□□□□□ -0.33
CPSF3-204ENST00000489403 SIPA1Q96FS4 1042 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms