RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 DNAJC24Q6P3W2 148 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 ALKBH5Q6P6C2 394 aaKnown RBP12.44□□□□□ -0.42
VPS13D-204ENST00000469054 RHBDF2Q6PJF5 856 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 DNAAF5Q86Y56 855 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 DENND1CQ8IV53 801 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 EMC1Q8N766 993 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 NT5C3BQ969T7 300 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 TRIM11Q96F44 468 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 MSANTD3Q96H12 275 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 FCRL2Q96LA5 508 aaPredicted RBP12.44□□□□□ -0.42
VPS13D-204ENST00000469054 NPY6RQ99463 290 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 DEF6Q9H4E7 631 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 FAM204AQ9H8W3 233 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 NHEJ1Q9H9Q4 299 aaPredicted RBP12.44□□□□□ -0.42
VPS13D-204ENST00000469054 DDIT4Q9NX09 232 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 PIAS3Q9Y6X2 628 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 DENND4CQ5VZ89 1909 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 NUP210Q8TEM1 1887 aaPredicted RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SYNJ2BP-COX16A0A087WUM0 186 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 GOLGA6L3A6NEY3 463 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 C2CD4BA6NLJ0 364 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SPECC1L-ADORA2AF8WAN1 911 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 MAN2B1O00754 1011 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 AKR1B10O60218 316 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 GJB6O95452 261 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 LATS1O95835 1130 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 CYP17A1P05093 508 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 MYBL1P10243 752 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SLC2A3P11169 496 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 PDGFRAP16234 1089 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 CTHP32929 405 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 GJA4P35212 333 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 RFC1P35251 1148 aaPredicted RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 CHKAP35790 457 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SOX9P48436 509 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SULT1E1P49888 294 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 AMPD2Q01433 879 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 GFPT1Q06210 699 aaPredicted RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 NME3Q13232 169 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 MAMLD1Q13495 774 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SLC18A3Q16572 532 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SLC25A52Q3SY17 297 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 ZC3H12AQ5D1E8 599 aaKnown RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 LY6G5CQ5SRR4 150 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 PPP1R15BQ5SWA1 713 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 PLEKHA7Q6IQ23 1121 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 TRNP1Q6NT89 227 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 TPRG1Q6ZUI0 275 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 RALGPS2Q86X27 583 aaPredicted RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 JOSD2Q8TAC2 188 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 RXFP2Q8WXD0 754 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 AZIN2Q96A70 460 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 ZNF653Q96CK0 615 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 PGAP3Q96FM1 320 aaPredicted RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 CCDC42Q96M95 316 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 CFAP57Q96MR6 1250 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 ADAM33Q9BZ11 813 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SPHK2Q9NRA0 654 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 PARVAQ9NVD7 372 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 TMEM51Q9NW97 253 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 COX16Q9P0S2 106 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 IMPACTQ9P2X3 320 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 CNOT8Q9UFF9 292 aaKnown RBP12.43□□□□□ -0.42
VPS13D-204ENST00000469054 STOML2Q9UJZ1 356 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 NENFQ9UMX5 172 aa12.43□□□□□ -0.42
VPS13D-204ENST00000469054 SHISA7A6NL88 538 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 ACSL4O60488 711 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 GPR37L1O60883 481 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 ADH1CP00326 375 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 F9P00740 461 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 PDGFBP01127 241 aaPredicted RBP12.42□□□□□ -0.42
VPS13D-204ENST00000469054 APOEP02649 317 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 TFE3P19532 575 aaPredicted RBP12.42□□□□□ -0.42
VPS13D-204ENST00000469054 ABCB4P21439 1286 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 SDC4P31431 198 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 CCR1P32246 355 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 SLC11A2P49281 568 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 RPL7AP62424 266 aaKnown RBP12.42□□□□□ -0.42
VPS13D-204ENST00000469054 GAD2Q05329 585 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 DEUP1Q05D60 604 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 CCDC14Q49A88 953 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 ADGRF1Q5T601 910 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 OTUD1Q5VV17 481 aaPredicted RBP12.42□□□□□ -0.42
VPS13D-204ENST00000469054 DCUN1D2Q6PH85 259 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 C1orf228Q6PIY5 440 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 ZNF852Q6ZMS4 543 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 TPGS1Q6ZTW0 290 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 BNIPLQ7Z465 357 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 BMP8AQ7Z5Y6 402 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 TMEM25Q86YD3 366 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 FAM217AQ8IXS0 508 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 CPXM2Q8N436 756 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 SPC24Q8NBT2 197 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 FAM3CQ92520 227 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 RNF34Q969K3 372 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 PBXIP1Q96AQ6 731 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 CHFRQ96EP1 664 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 PANX2Q96RD6 677 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms