RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 KCNA4P22459 653 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 DAOAP59103 153 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 ZNF445P59923 1031 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 CAMK4Q16566 473 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 FYB2Q5VWT5 728 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 BSPRYQ5W0U4 402 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 TCEAL6Q6IPX3 200 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 UCMAQ8WVF2 138 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 IRGQQ8WZA9 623 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 EDEM1Q92611 657 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 TCEAL3Q969E4 200 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 GABRG3Q99928 467 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 CHMP5Q9NZZ3 219 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 CALCOCO1Q9P1Z2 691 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 KIAA1468Q9P260 1216 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 GFRA2O00451 464 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 NPC1O15118 1278 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 FBXO21O94952 628 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 CISD3P0C7P0 127 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 GABRG2P18507 467 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 ZNF132P52740 706 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 MFAP3P55082 362 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 STARD3Q14849 445 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 E2F5Q15329 346 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 TRIP4Q15650 581 aaPredicted RBP14.57□□□□□ -0.08
USP4-206ENST00000461553 CNGA2Q16280 664 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 MAP7D1Q3KQU3 841 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 PPM1JQ5JR12 505 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 STPG1Q5TH74 334 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 RNF43Q68DV7 783 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 FAM217AQ8IXS0 508 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 EHBP1Q8NDI1 1231 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 IPO4Q8TEX9 1081 aaKnown RBP14.57□□□□□ -0.08
USP4-206ENST00000461553 DDI1Q8WTU0 396 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 SLC35F5Q8WV83 523 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 ACOX2Q99424 681 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 RXFP3Q9NSD7 469 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 CACNA2D2Q9NY47 1150 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 SFMBT1Q9UHJ3 866 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 RWDD2AQ9UIY3 292 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 FBXO10Q9UK96 956 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 HCN2Q9UL51 889 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 SLC27A6Q9Y2P4 619 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 ASCC3Q8N3C0 2202 aaKnown RBP14.57□□□□□ -0.08
USP4-206ENST00000461553 CACNA1EQ15878 2313 aa14.57□□□□□ -0.08
USP4-206ENST00000461553 A0A1W2PQF6 199 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 RNF225M0QZC1 329 aaPredicted RBP14.56□□□□□ -0.08
USP4-206ENST00000461553 PIK3R2O00459 728 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 KHNYNO15037 678 aaKnown RBP14.56□□□□□ -0.08
USP4-206ENST00000461553 AP5Z1O43299 807 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 MSI1O43347 362 aaKnown RBP14.56□□□□□ -0.08
USP4-206ENST00000461553 LATS1O95835 1130 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 LTFP02788 710 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 NDUFV2P19404 249 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 DPP6P42658 865 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 EIF4HQ15056 248 aaKnown RBP14.56□□□□□ -0.08
USP4-206ENST00000461553 GEN1Q17RS7 908 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 LYSMD4Q5XG99 296 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 PMF1Q6P1K2 205 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 MSANTD2Q6P1R3 559 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 SLC36A4Q6YBV0 504 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 ARMCX6Q7L4S7 300 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 CREBRFQ8IUR6 639 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 PIGKQ92643 395 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 HSFY1Q96LI6 401 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 FAM81BQ96LP2 452 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 KREMEN1Q96MU8 473 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 ZSWIM1Q9BR11 485 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 RAD54BQ9Y620 910 aa14.56□□□□□ -0.08
USP4-206ENST00000461553 ACACBO00763 2458 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 LNP1A1A4G5 178 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 SART1O43290 800 aaKnown RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 MED7O43513 233 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 ZNF217O75362 1048 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 CALCAP01258 141 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 RPL6Q02878 288 aaKnown RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 ARID5AQ03989 594 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 TPD52L1Q16890 204 aaPredicted RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 MPPE1Q53F39 396 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 SPDYCQ5MJ68 293 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 NUGGCQ68CJ6 796 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 KIAA1211LQ6NV74 962 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 TRIM65Q6PJ69 517 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 KIAA1324Q6UXG2 1013 aaKnown RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 ENOSF1Q7L5Y1 443 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 TMEFF1Q8IYR6 380 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 CLEC4CQ8WTT0 213 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 ERLEC1Q96DZ1 483 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 P2RY11Q96G91 374 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 SLC2A11Q9BYW1 496 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 UBE2TQ9NPD8 197 aaPredicted RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 ST7Q9NRC1 585 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 MBD1Q9UIS9 605 aaPredicted RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 STON1Q9Y6Q2 735 aa14.55□□□□□ -0.08
USP4-206ENST00000461553 ATXN2Q99700 1313 aaKnown RBP14.55□□□□□ -0.08
USP4-206ENST00000461553 HOXD9P28356 352 aaPredicted RBP14.54□□□□□ -0.08
USP4-206ENST00000461553 GNA15P30679 374 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 MEA1Q16626 185 aa14.54□□□□□ -0.08
USP4-206ENST00000461553 GBP6Q6ZN66 633 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms