RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 BEND5Q7L4P6 421 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 SLC26A9Q7LBE3 791 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 ZDHHC17Q8IUH5 632 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 C1orf210Q8IVY1 113 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 UNC45BQ8IWX7 931 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 SLC2A13Q96QE2 648 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 C11orf70Q9BRQ4 267 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 TTYH3Q9C0H2 523 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 CHRDQ9H2X0 955 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 FAM204AQ9H8W3 233 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 WDR35Q9P2L0 1181 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 KIAA1549LQ6ZVL6 1849 aa19.43■□□□□ 0.7
SHH-204ENST00000441114 GOLGA6L7A0A1B0GV03 622 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 HOXC11O43248 304 aaPredicted RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 CBFA2T2O43439 604 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 LAMTOR5O43504 91 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 DAB1O75553 588 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 MOCS2O96007 188 aaPredicted RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 SKILP12757 684 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 UNGP13051 313 aaPredicted RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 NSFP46459 744 aaKnown RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 SEC13P55735 322 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 TCF15Q12870 199 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 GAS6Q14393 721 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 NUGGCQ68CJ6 796 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 EZH1Q92800 747 aaPredicted RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 FCRL2Q96LA5 508 aaPredicted RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 XPO6Q96QU8 1125 aaKnown RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 EDEM3Q9BZQ6 932 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 KCNH6Q9H252 994 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 ARHGEF4Q9NR80 690 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 DNAJC17Q9NVM6 304 aaKnown RBP19.42■□□□□ 0.7
SHH-204ENST00000441114 TLR6Q9Y2C9 796 aa19.42■□□□□ 0.7
SHH-204ENST00000441114 TRIM24O15164 1050 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 RNF40O75150 1001 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 TULP3O75386 442 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 IGLV3-27P01718 113 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 CYBBP04839 570 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 APODP05090 189 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 MMP8P22894 467 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 GBP1P32455 592 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 SLC11A2P49281 568 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 PTPN5P54829 565 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 MESP2Q0VG99 397 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 NME3Q13232 169 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 ZC3H12AQ5D1E8 599 aaKnown RBP19.41■□□□□ 0.7
SHH-204ENST00000441114 FIGNQ5HY92 759 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 E4F1Q66K89 784 aaPredicted RBP19.41■□□□□ 0.7
SHH-204ENST00000441114 SFTPA1Q8IWL2 248 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 ZNF397Q8NF99 534 aaPredicted RBP19.41■□□□□ 0.7
SHH-204ENST00000441114 DDI1Q8WTU0 396 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 RNF34Q969K3 372 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 HAUS4Q9H6D7 363 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 METTL5Q9NRN9 209 aaKnown RBP19.41■□□□□ 0.7
SHH-204ENST00000441114 DDIT4Q9NX09 232 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHH-204ENST00000441114 AIPL1Q9NZN9 384 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 MARK1Q9P0L2 795 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 DEC1Q9P2X7 70 aa19.41■□□□□ 0.7
SHH-204ENST00000441114 ANTXRLA6NF34 631 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 TMCO5BA8MYB1 307 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.4■□□□□ 0.7
SHH-204ENST00000441114 M0QYT0 321 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 IRAK2O43187 625 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 ACSL4O60488 711 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 KAT7O95251 611 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 APOEP02649 317 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 NOS2P35228 1153 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 EIF2DP41214 584 aaKnown RBP19.4■□□□□ 0.7
SHH-204ENST00000441114 SULT1E1P49888 294 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 CSTF1Q05048 431 aaKnown RBP19.4■□□□□ 0.7
SHH-204ENST00000441114 RING1Q06587 406 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 KLHL30Q0D2K2 578 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 ADGRF1Q5T601 910 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 GRAMD4Q6IC98 578 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 PKN3Q6P5Z2 889 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 RFWD3Q6PCD5 774 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 TSSK4Q6SA08 328 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 ETFBKMTQ8IXQ9 262 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 SYNPOQ8N3V7 929 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 CPXM2Q8N436 756 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 P2RY11Q96G91 374 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 SLC39A13Q96H72 371 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 ADAM22Q9P0K1 906 aa19.4■□□□□ 0.7
SHH-204ENST00000441114 A0A1W2PQJ5 194 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 TBC1D3BA6NDS4 549 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 K7EQS6 105 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 GJB6O95452 261 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 MATKP42679 507 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 SATB1Q01826 763 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 CENPCQ03188 943 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 NNTQ13423 1086 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 FBXO43Q4G163 708 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 MPPE1Q53F39 396 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 C2orf27AQ580R0 203 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 FYB2Q5VWT5 728 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 RPLP0P6Q8NHW5 317 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 ATOH1Q92858 354 aaPredicted RBP19.39■□□□□ 0.69
SHH-204ENST00000441114 FAM86C1Q9NVL1 165 aa19.39■□□□□ 0.69
SHH-204ENST00000441114 XPO7Q9UIA9 1087 aaKnown RBP19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms