RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 H7C4K7 107 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 TRUB2O95900 331 aaKnown RBP11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 KRT4P19013 534 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 HARS2P49590 506 aaKnown RBP11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 NPNTQ6UXI9 565 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 TNS4Q8IZW8 715 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 AGR3Q8TD06 166 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 CYP4F11Q9HBI6 524 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 RRN3Q9NYV6 651 aa11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 MARCOQ9UEW3 520 aaPredicted RBP11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 R3HDM2Q9Y2K5 976 aaKnown RBP11.94□□□□□ -0.5
TRAPPC9-202ENST00000438773 PTPRJQ12913 1337 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 TRIM49D1C9J1S8 452 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 IGF2BP3O00425 579 aaKnown RBP eCLIP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 SSTR1P30872 391 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 CCR1P32246 355 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 RPL9P32969 192 aaKnown RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 ETFBP38117 255 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 RPL10AP62906 217 aaKnown RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 ZC3H12AQ5D1E8 599 aaKnown RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 NAIF1Q69YI7 327 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 NAPEPLDQ6IQ20 393 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 CHST12Q9NRB3 414 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 PCMTD2Q9NV79 361 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 SCOCQ9UIL1 159 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 CDH9Q9ULB4 789 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 SLC12A8A0AV02 714 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 AOC2O75106 756 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 CFHP08603 1231 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 GJA5P36382 358 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 ELF3P78545 371 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 WLSQ5T9L3 541 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 DPY19L2P1Q6NXN4 242 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 RAB44Q7Z6P3 723 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 RNF135Q8IUD6 432 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 NDUFAF2Q8N183 169 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 COLGALT1Q8NBJ5 622 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 BHMTQ93088 406 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 SNX27Q96L92 541 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 DEFB118Q96PH6 123 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 MRPL42Q9Y6G3 142 aaKnown RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 LAMB1P07942 1786 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 AP3B1O00203 1094 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 PSMD3O43242 534 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 PPFIA2O75334 1257 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 LRCH4O75427 683 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 DCTN3O75935 186 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 NCF2P19878 526 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 RECQLP46063 649 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 ATXN3P54252 364 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 HADHBP55084 474 aaKnown RBP11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 LILRA4P59901 499 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 XYLT1Q86Y38 959 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 SLC25A41Q8N5S1 370 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 CCNYL1Q8N7R7 359 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 RNF157Q96PX1 679 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 NOD2Q9HC29 1040 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 NINJ2Q9NZG7 142 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 GGA2Q9UJY4 613 aa11.93□□□□□ -0.5
TRAPPC9-202ENST00000438773 LAMB2P55268 1798 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 ELK3P41970 407 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 ASPAP45381 313 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 SERPINB9P50453 376 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 PRMT2P55345 433 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 CCL23P55773 120 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 NOMO2Q5JPE7 1267 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 SH2D4BQ5SQS7 431 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 C1orf220Q5T0J3 134 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 PMF1Q6P1K2 205 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 TOP6BLQ8N6T0 577 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 PPHLN1Q8NEY8 458 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 SCG3Q8WXD2 468 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 ERP27Q96DN0 273 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 STRA6Q9BX79 667 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 EPB41L4BQ9H329 900 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 C20orf96Q9NUD7 363 aaPredicted RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 TXLNGQ9NUQ3 528 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 ABCF3Q9NUQ8 709 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 UBP1Q9NZI7 540 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 NAALADL1Q9UQQ1 740 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 IGKV6D-21A0A0A0MT36 114 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 C5orf60A6NFR6 353 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 CNMDO75829 334 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 ATP6V1G2O95670 118 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 F2P00734 622 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 DNAJB2P25686 324 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 TUSC3Q13454 348 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 LVRNQ6Q4G3 990 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 SPATA21Q7Z572 469 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 MYLK4Q86YV6 388 aaPredicted RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 HTR3CQ8WXA8 447 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 MIEF2Q96C03 454 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 C16orf70Q9BSU1 422 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 TKTL2Q9H0I9 626 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 FBXO44Q9H4M3 255 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 ANLNQ9NQW6 1124 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 CREBZFQ9NS37 354 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 WDR70Q9NW82 654 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 PGAP2Q9UHJ9 254 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms