RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 GABRB2P47870 512 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 BST2Q10589 180 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 HEATR6Q6AI08 1181 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 PID1Q7Z2X4 250 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 ZNF75CPQ92670 426 aaPredicted RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 PCED1BQ96HM7 432 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 TMEM109Q9BVC6 243 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 NSRP1Q9H0G5 558 aaKnown RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 TSPYL2Q9H2G4 693 aaPredicted RBP12.35□□□□□ -0.43
PTPRN-204ENST00000423636 DDIT4Q9NX09 232 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 KLHL14Q9P2G3 628 aa12.35□□□□□ -0.43
PTPRN-204ENST00000423636 ZBTB6Q15916 424 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 PKDCCQ504Y2 493 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 ANKRD52Q8NB46 1076 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 ATP2A3Q93084 1043 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 PGBD4Q96DM1 585 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 SLC4A5Q9BY07 1137 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 PLAC1Q9HBJ0 212 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTPRN-204ENST00000423636 SFMBT1Q9UHJ3 866 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 CFAP69A5D8W1 941 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 MGEA5O60502 916 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 TMEM110Q86TL2 294 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 NFKBIZQ9BYH8 718 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 PRDM12Q9H4Q4 367 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 EURLQ9NYK6 297 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 PRG3Q9Y2Y8 225 aaPredicted RBP12.34□□□□□ -0.43
PTPRN-204ENST00000423636 PLXNB2O15031 1838 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 CHD7Q9P2D1 2997 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 FAM237BA0A1B0GVD1 139 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 FSBPO95073 299 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 CXCR3P49682 368 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 DEUP1Q05D60 604 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 TFDP2Q14188 446 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 DCAF4L1Q3SXM0 396 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 NCBP2-AS2Q69YL0 99 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 UNC5AQ6ZN44 842 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 CLEC20AQ6ZU45 233 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 ANKRD23Q86SG2 305 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 ZNF410Q86VK4 478 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 SPATA6LQ8N4H0 392 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 COLGALT1Q8NBJ5 622 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 TTC13Q8NBP0 860 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 GSTCDQ8NEC7 633 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 CENPTQ96BT3 561 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 TMLHEQ9NVH6 421 aa12.34□□□□□ -0.43
PTPRN-204ENST00000423636 SHROOM3Q8TF72 1996 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 C9IYK1 514 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 PIRO00625 290 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 DNAJC6O75061 913 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 UPP2O95045 317 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 CHRNA1P02708 482 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 BCAT1P54687 386 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 GJA9P57773 515 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 NCALDP61601 193 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 SPDYCQ5MJ68 293 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 ARHGAP36Q6ZRI8 547 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 SCN4BQ8IWT1 228 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 FNIP1Q8TF40 1166 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 G3BP2Q9UN86 482 aaKnown RBP12.33□□□□□ -0.44
PTPRN-204ENST00000423636 CHKBQ9Y259 395 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 A0A0G2JMZ2 1700 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 LRRC37A2A6NM11 1700 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 LYPLA1O75608 230 aaPredicted RBP12.33□□□□□ -0.44
PTPRN-204ENST00000423636 KCNA4P22459 653 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 PCK1P35558 622 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 PURAQ00577 322 aaKnown RBP12.33□□□□□ -0.44
PTPRN-204ENST00000423636 ENPEPQ07075 957 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 NR1H3Q13133 447 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 KCNJ11Q14654 390 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 ACCSLQ4AC99 568 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 TIGD5Q53EQ6 642 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 BOLA3Q53S33 107 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 CES4AQ5XG92 561 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 OR52K1Q8NGK4 314 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 MAGEB18Q96M61 343 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 IQCGQ9H095 443 aaKnown RBP12.33□□□□□ -0.44
PTPRN-204ENST00000423636 CAB39LQ9H9S4 337 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 MORF4L1Q9UBU8 362 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 NOD1Q9Y239 953 aa12.33□□□□□ -0.44
PTPRN-204ENST00000423636 DICER1Q9UPY3 1922 aaKnown RBP12.33□□□□□ -0.44
PTPRN-204ENST00000423636 ARL5CA6NH57 179 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 RNF103O00237 685 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 MDM4O15151 490 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 HMBSP08397 361 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 CCND3P30281 292 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 PHBP35232 272 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ARL4AP40617 200 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 GPR15P49685 360 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 FLT3LGP49771 235 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 DLG2Q15700 870 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 TAF1BQ53T94 588 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 CMC1Q7Z7K0 106 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 VPS52Q8N1B4 723 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 P2RY11Q96G91 374 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ACSS3Q9H6R3 686 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ARHGEF4Q9NR80 690 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 RBM47A0AV96 593 aaKnown RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 RRN3P2A6NIE6 340 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 TYROBPO43914 113 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms