RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NUBP1P53384 320 aa13□□□□□ -0.33
SKA1-203ENST00000417656 MLLT6P55198 1093 aaPredicted RBP13□□□□□ -0.33
SKA1-203ENST00000417656 TBX4P57082 545 aa13□□□□□ -0.33
SKA1-203ENST00000417656 RNASE9P60153 205 aaKnown RBP13□□□□□ -0.33
SKA1-203ENST00000417656 PON2Q15165 354 aa13□□□□□ -0.33
SKA1-203ENST00000417656 GAB4Q2WGN9 574 aa13□□□□□ -0.33
SKA1-203ENST00000417656 LY6G5CQ5SRR4 150 aa13□□□□□ -0.33
SKA1-203ENST00000417656 LCE2DQ5TA82 110 aaPredicted RBP13□□□□□ -0.33
SKA1-203ENST00000417656 OTUD1Q5VV17 481 aaPredicted RBP13□□□□□ -0.33
SKA1-203ENST00000417656 TRNP1Q6NT89 227 aa13□□□□□ -0.33
SKA1-203ENST00000417656 ZNF852Q6ZMS4 543 aa13□□□□□ -0.33
SKA1-203ENST00000417656 DNAAF5Q86Y56 855 aa13□□□□□ -0.33
SKA1-203ENST00000417656 CCDC105Q8IYK2 499 aa13□□□□□ -0.33
SKA1-203ENST00000417656 TMEM105Q8N8V8 129 aa13□□□□□ -0.33
SKA1-203ENST00000417656 PJA1Q8NG27 643 aa13□□□□□ -0.33
SKA1-203ENST00000417656 FCRL2Q96LA5 508 aaPredicted RBP13□□□□□ -0.33
SKA1-203ENST00000417656 ANP32EQ9BTT0 268 aa13□□□□□ -0.33
SKA1-203ENST00000417656 DCLK3Q9C098 648 aa13□□□□□ -0.33
SKA1-203ENST00000417656 COX16Q9P0S2 106 aa13□□□□□ -0.33
SKA1-203ENST00000417656 AGO1Q9UL18 857 aaKnown RBP13□□□□□ -0.33
SKA1-203ENST00000417656 MTF2Q9Y483 593 aaPredicted RBP13□□□□□ -0.33
SKA1-203ENST00000417656 MYOFQ9NZM1 2061 aa13□□□□□ -0.33
SKA1-203ENST00000417656 MAN2B1O00754 1011 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 PI15O43692 258 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 MOCS2O96007 188 aaPredicted RBP12.99□□□□□ -0.33
SKA1-203ENST00000417656 TPM1P09493 284 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 TFE3P19532 575 aaPredicted RBP12.99□□□□□ -0.33
SKA1-203ENST00000417656 AOC1P19801 751 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 MATKP42679 507 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 HARS2P49590 506 aaKnown RBP12.99□□□□□ -0.33
SKA1-203ENST00000417656 SULT1E1P49888 294 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 GSCP56915 257 aaPredicted RBP12.99□□□□□ -0.33
SKA1-203ENST00000417656 CDK17Q00537 523 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 RING1Q06587 406 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 NR1H3Q13133 447 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 NNTQ13423 1086 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 ANO4Q32M45 955 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 NUGGCQ68CJ6 796 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 ACAD10Q6JQN1 1059 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 RHBDF2Q6PJF5 856 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 TPGS1Q6ZTW0 290 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 C12orf40Q86WS4 652 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 TMEM25Q86YD3 366 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 ADGRG2Q8IZP9 1017 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 EMC1Q8N766 993 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 SLC39A13Q96H72 371 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 DNAJC7Q99615 494 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 ADAM33Q9BZ11 813 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 SPHK2Q9NRA0 654 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 DDIT4Q9NX09 232 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.99□□□□□ -0.33
SKA1-203ENST00000417656 ARHGAP20Q9P2F6 1191 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 TMEM59LQ9UK28 342 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 TLR6Q9Y2C9 796 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 ZNF510Q9Y2H8 683 aa12.99□□□□□ -0.33
SKA1-203ENST00000417656 MRPS17Q9Y2R5 130 aaKnown RBP12.99□□□□□ -0.33
SKA1-203ENST00000417656 FAM170BA6NMN3 283 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 NEDD8-MDP1E9PL57 170 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 M0QYT0 321 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 HOXC11O43248 304 aaPredicted RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 DCNP07585 359 aaKnown RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 HNRNPH3P31942 346 aaKnown RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 NOS2P35228 1153 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 OPRD1P41143 372 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 ADKP55263 362 aaKnown RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 GAD2Q05329 585 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 KDSRQ06136 332 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 TBX2Q13207 712 aaPredicted RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 NME3Q13232 169 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 ZC3H12AQ5D1E8 599 aaKnown RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 DNAJC24Q6P3W2 148 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 C1orf228Q6PIY5 440 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 MCOLN2Q8IZK6 566 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 ZNF687Q8N1G0 1237 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 C3orf20Q8ND61 904 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 JOSD2Q8TAC2 188 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 BHMTQ93088 406 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 P2RY11Q96G91 374 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 MRFAP1L1Q96HT8 127 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 CFAP57Q96MR6 1250 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 TBCBQ99426 244 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 NPY6RQ99463 290 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.98□□□□□ -0.33
SKA1-203ENST00000417656 SELENOOQ9BVL4 669 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 ABHD10Q9NUJ1 306 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 CALCOCO1Q9P1Z2 691 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 WDR35Q9P2L0 1181 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 XPO7Q9UIA9 1087 aaKnown RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 STAP1Q9ULZ2 295 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 BZW2Q9Y6E2 419 aaKnown RBP12.98□□□□□ -0.33
SKA1-203ENST00000417656 ZDBF2Q9HCK1 2354 aa12.98□□□□□ -0.33
SKA1-203ENST00000417656 F5P12259 2224 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 TCRBV5S1A1TA0A578 114 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 TRDMT1O14717 391 aaKnown RBP12.97□□□□□ -0.33
SKA1-203ENST00000417656 LATS1O95835 1130 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 APOEP02649 317 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 RRM1P23921 792 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 CLCN5P51795 746 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 AMPD2Q01433 879 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 EIF4EBP2Q13542 120 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 217.1 ms