RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CNPY1Q3B7I2 92 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CCDC153Q494R4 210 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 MTERF2Q49AM1 385 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 HP1BP3Q5SSJ5 553 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZFYVE27Q5T4F4 411 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 TEDDM1Q5T9Z0 273 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ARMC3Q5W041 872 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM160B1Q5W0V3 765 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 LMBRD2Q68DH5 695 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZFP1Q6P2D0 407 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 LCLAT1Q6UWP7 414 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 UNC5AQ6ZN44 842 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ARID3BQ8IVW6 561 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ADGRF2Q8IZF7 708 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CHST13Q8NET6 341 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ANKRD36BP1Q96IX9 119 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM210AQ96ND0 272 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PEBP4Q96S96 227 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 RTKNQ9BST9 563 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 C11orf84Q9BUA3 381 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 KLHL4Q9C0H6 718 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 TMEM39BQ9GZU3 492 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ASB7Q9H672 318 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ACAD9Q9H845 621 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 AS3MTQ9HBK9 375 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 METTL5Q9NRN9 209 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PTTG2Q9NZH5 202 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PPARGC1AQ9UBK2 798 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 BCAP29Q9UHQ4 241 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 RAB26Q9ULW5 256 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GMEB1Q9Y692 573 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SBF1O95248 1867 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 LRRIQ4A6NIV6 560 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 GOLGA8RI6L899 631 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 APOL1O14791 398 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ENO1P06733 434 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CD48P09326 243 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 P4HA1P13674 534 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TCF3P15923 654 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RGS2P41220 211 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 HSPA13P48723 471 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SLC26A2P50443 739 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CSRP3P50461 194 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 COPAP53621 1224 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 AQP5P55064 265 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 YWHAGP61981 247 aaKnown RBP eCLIP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MED21Q13503 144 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RFTN1Q14699 578 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 HERC3Q15034 1050 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ADRM1Q16186 407 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ANKRD20A4Q4UJ75 823 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM182BQ5T319 152 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 C1orf146Q5VVC0 180 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 EP400NLQ6ZTU2 488 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SETD3Q86TU7 594 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZBTB8OSQ8IWT0 167 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PQLC3Q8N755 202 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CENPIQ92674 756 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MAML3Q96JK9 1138 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ACAP3Q96P50 834 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 QKIQ96PU8 341 aaKnown RBP eCLIP5.92□□□□□ -1.462e-20■■■■■ 43.8
CCDC88A-203ENST00000412148 KCNK16Q96T55 309 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MTMR12Q9C0I1 747 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RPAP3Q9H6T3 665 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SUDS3Q9H7L9 328 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PIDD1Q9HB75 910 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 GBA2Q9HCG7 927 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SMYD2Q9NRG4 433 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TNFSF13BQ9Y275 285 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MAD1L1Q9Y6D9 718 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF638Q14966 1978 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CLRN2A0PK11 232 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CXorf49A8MYA2 514 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PRR5-ARHGAP8B1AHC4 643 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ACKR2O00590 384 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PLIN3O60664 434 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ITGBL1O95965 494 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CSH1P0DML2 217 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CSH2P0DML3 217 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PSMD8P48556 350 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 BACE1P56817 501 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ARHGAP8P85298 464 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MAP2K5Q13163 448 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CCNIQ14094 377 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 STXBP2Q15833 593 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PKDCCQ504Y2 493 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 FSCBQ5H9T9 825 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF667Q5HYK9 610 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CYP4A22Q5TCH4 519 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 LRRC8BQ6P9F7 803 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 UGT2A3Q6UWM9 527 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CAPN12Q6ZSI9 719 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PLPPR4Q7Z2D5 763 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TICAM1Q8IUC6 712 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CPXCR1Q8N123 301 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 AHI1Q8N157 1196 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RDH11Q8TC12 318 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 DLG3Q92796 817 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ATP2A3Q93084 1043 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms